1OMBA

Sequential assignment and structure determination of spider toxin omega-aga-ivb
Cysteine knot
Loop Piercing
view details
4-c-12-b-25-c-20 19-b-36
Chain Sequence
CIAEDYGKCTWGGTKCCRGRPCRCSMIGTNCECTP
sequence length 35
structure length 35
publication title Sequential assignment and structure determination of spider toxin omega-Aga-IVB.
pubmed doi rcsb
molecule tags Toxin
molecule keywords OMEGA-AGA-IVB
source organism Agelenopsis aperta
ec nomenclature
pdb deposition date 1993-09-09
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
4.10.40.10 Few Secondary Structures Irregular Omega-AgatoxinV Omega-AgatoxinV 1ombA00
1OAVA 1QDPA 2ROOA 1G9PA 1IVAA 1OMAA 1OAWA 1AGGA 1VTXA 1OMBA
chains in the KnotProt database with same CATH superfamily
1OAVA 1QDPA 2ROOA 2DCWA 1G9PA 1IVAA 1OMAA 1OAWA 1AGGA 1VTXA 2DCVA 1CIXA 1OMBA
chains in the KnotProt database with same CATH topology
1OAVA 1QDPA 2ROOA 2DCWA 1G9PA 1IVAA 1OMAA 1OAWA 1AGGA 1VTXA 2DCVA 1CIXA 1OMBA
chains in the KnotProt database with same CATH homology


 
#chains in the KnotProt database with same CATH superfamily
 1OAV A;  1QDP A;  2ROO A;  1G9P A;  1IVA A;  1OMA A;  1OAW A;  1AGG A;  1VTX A;  1OMB A; 
#chains in the KnotProt database with same CATH topology
 1OAV A;  1QDP A;  2ROO A;  2DCW A;  1G9P A;  1IVA A;  1OMA A;  1OAW A;  1AGG A;  1VTX A;  2DCV A;  1CIX A;  1OMB A; 
#chains in the KnotProt database with same CATH homology
 1OAV A;  1QDP A;  2ROO A;  2DCW A;  1G9P A;  1IVA A;  1OMA A;  1OAW A;  1AGG A;  1VTX A;  2DCV A;  1CIX A;  1OMB A; 
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similar chains in the KnotProt database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the KnotProt database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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