| Loop | Piercing | ||||
|---|---|---|---|---|---|
| view details | 1166-c-1182-b-1185-c-1185 | 1163-b-1185 |
Chain Sequence |
FEDESAPITAEDSWAVISAFFREKGLVSQQLDSFNQFVDYTLQDIICEDSTLIE------------------ISFGKIYVTKPMVNESDGVTHALYPQEARLRNLTYSSGLFVDVKKRTYEKVFIGRLPIMLRSKNCYLS-------------------------EATESDLYKLKECPFDMGGYFIINGSEKVLIAQERSAGNIVQVFKKAAPSPISHVAEIRSALEKGSRFISTLQVKLYGREGSSARTIKATLPYIKQDIPIVIIFRALGIIPDGEILEHICYDVNDWQMLEMLKPCVEDGFVIQDRETALDFIGRRGTALGIKKEKRIQYAKDILQKEFLPHITQLEGFESRKAFFLGYMINRLLLCALDRKDQDDRDHFGKKRLDLAGPLLAQLFKTLFKKLTKDIFRYMQRTVELAINAKTITSGLKYALATGNWGAGVSQVLNRYTYSSTLSHLRRT--------NTPIAKPRQLHNTHWGLVCPAETPEGQACG---------LVKNLSLMSCISVGTDPMPIITFLSEWGMEPLEDY------VPHQSPDATRVFVNGVWHGVHRNPARLMETLRTLRRKGDINPEVSMIRDIREKELKIFTDAGRVYRPLFIVEDDESLGHKELKVRKGHIAKLMATEYQDEYTWSSLLNEGLVEYIDAEEEESILIAMQPEDLEPDVDPAKRIRVSHHATTFTHCEIHPSMILGVAA---------SIIPFPDHNQSPRNTYQSAMGKQAMGVFLTNYNVRMDTMANILY---------YPQKPLGTTRAMEYLKFRELPAGQNAIVAIACYSGYNQEDSMIMNQSSIDRGLFRSLFFRSYMDQEKKYGMSITETFEKPQRTNTLRMKHGTYDKLDDDGLIAPGVRVSGEDVIIGKTTSKRDASTPLRSTENGIVDQVLVTTNQDGLKFVKVRVRTTKIPQIGDKFASRHGQKGTIGITYRREDMPFTAEGIVPDLIINPHAI----------------PSRMTVAHLIECLLSKVAALSGNEGDASPFTDITVEGISKLLREHGYQSRGFEVMYNGHTGKKLMAQIFFGPTYYQRLRHMVDDKIHARARGPGLRFGEMERDCMIAHGAASFLKERLMEASDAFRVHICGICGLMTVIAKLNHNQFECKGCDNKIDIYQIHIPYAAKLLFQELMAMNITPRLYTDRSRDF
|
| sequence length |
1207
|
| structure length |
1091
|
| publication title |
Structural basis of transcription: nucleotide selection by rotation in the RNA polymerase II active center.
pubmed doi rcsb |
| molecule tags |
Transcription
|
| molecule keywords |
DNA-directed RNA polymerase II largest subunit
|
| missing residues |
54-71, 122-146, 421-428, 451-459, 486-491, 652-660, 696-704, 900-915, 1094-1109
|
| ec nomenclature |
ec
2.7.7.6: DNA-directed RNA polymerase. |
| pdb deposition date | 2004-06-30 |
Image from the rcsb pdb (www.rcsb.org)
cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Mainly Beta | Beta Barrel | OB fold (Dihydrolipoamide Acetyltransferase, E2P) | OB fold (Dihydrolipoamide Acetyltransferase, E2P) | ||
| Alpha Beta | Alpha-Beta Complex | Dna-directed Rna Polymerase Ii 140kd Polypeptide; Chain: B; domain 3 | Dna-directed Rna Polymerase Ii 140kd Polypeptide; Chain: B; domain 3 |
#chains in the KnotProt database with same CATH superfamily 1TWH B; 1TWG B; #chains in the KnotProt database with same CATH topology 1TWH B; 1K3R A; 1TWG B; #chains in the KnotProt database with same CATH homology 1TWH B; 1TWG B;
#similar chains in the KnotProt database (?% sequence similarity) ...loading similar chains, please wait... #similar chains, but unknotted ...loading similar chains, please wait... #similar chains in the pdb database (?% sequence similarity) ...loading similar chains, please wait...
