1D6WA

Structure of thrombin complexed with selective non-electrophilic inhibitors having cyclohexyl moieties at p1
Warning
  • Chain breaks within knot 31 (displayed as a gray area on the plot and as '-' on the sequence). The broken part of the chain has been replaced by a straight segment, which may affect what knot types are detected - be careful with interpreting results.
Genus: 64
Slipknot S +31

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Knot core range Knot core length Knot tails range Slipknot tails range Slipknot loops range N-end length C-end length Type
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+31 29-240 212 1-28 251-287 241-250 28 37 slipknot
Chain Sequence
ADCGLRPLFEKKSLEDKTERELLESYID--IVEGSDAEIGMSPWQVMLFRKSPQELLCGASLISDRWVLTAAHCLLYPPWDKNFTENDLLVRIGKHSRTRYERNIEKISMLEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPVCLPDRETAASLLQAGYKGRVTGWGNLKETGQ-------PSVLQVVNLPIVERPVCKDSTRIRITDNMFCAGYKPDEGKRGDACEGDSGGPFVMKSPFNNRWYQMGIVSWGEGCDRDGKYGFYTHVFRLKKWIQKVIDQF
Whole chain analysis

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Subchain analysis 

Knotoid cutoff: 0.5


Knotoid matrix content: 1


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Knot core range Knot core length Knot tails range Slipknot tails range Slipknot loops range N-end length C-end length Type
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2.1m 10-229 220 1-9 234-278 230-233 9 45 slipknot
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3.1m 29-231 203 1-28 241-278 232-240 28 38 slipknot
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2.1m 7-240 234 1-6 244-278 241-243 6 35 slipknot
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3.1m 22-240 219 1-9, 243-278 10-21, 241-242 9 36 slipknot
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2.1m 27-229 203 1-10, 232-278 11-26, 230-231 10 47 slipknot
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2.1m 28-240 213 1-21, 243-278 22-27, 241-242 21 36 slipknot
How to cite
KnotProt | Interdisciplinary Laboratory of Biological Systems Modelling