1EOJA

Design of p1' and p3' residues of trivalent thrombin inhibitors and their crystal structures
Warning
  • Chain breaks within knot 31 (displayed as a gray area on the plot and as '-' on the sequence). The broken part of the chain has been replaced by a straight segment, which may affect what knot types are detected - be careful with interpreting results.
Genus: 70
Slipknot S +31

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Knot core range Knot core length Knot tails range Slipknot tails range Slipknot loops range N-end length C-end length Type
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+31 30-241 212 1-29 253-289 242-252 29 37 slipknot
Chain Sequence
GGADCGLRPLFEKKSLEDKTERELLESYI---IVEGSDAEIGMSPWQVMLFRKSPQELLCGASLISDRWVLTAAHCLLYPPWDKNFTENDLLVRIGKHSRTRYERNIEKISMLEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPVCLPDRETAASLLQAGYKGRVTGWGNLKEGQP--------SVLQVVNLPIVERPVCKDSTRIRITDNMFCAGYKPDEGKRGDACEGDSGGPFVMKSPFNNRWYQMGIVSWGEGCDRDGKYGFYTHVFRLKKWIQKVIDQF
Whole chain analysis

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Subchain analysis 

Knotoid cutoff: 0.5


Knotoid matrix content: 1


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Knot core range Knot core length Knot tails range Slipknot tails range Slipknot loops range N-end length C-end length Type
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2.1m 29-228 200 1-28 234-278 229-233 28 45 slipknot
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3.1m 30-232 203 1-29 241-278 233-240 29 38 slipknot
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2.1m 8-240 233 1-7 244-278 241-243 7 35 slipknot
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2.1m 29-240 212 1-7, 244-278 8-28, 241-243 7 35 slipknot
How to cite
KnotProt | Interdisciplinary Laboratory of Biological Systems Modelling