1GIYM

Crystal structure of the ribosome at 5.5 a resolution. this file, 1giy, contains the 50s ribosome subunit. the 30s ribosome subunit, three trna, and mrna molecules are in the file 1gix
Warning
  • Chain breaks within knot 31 (displayed as a gray area on the plot and as '-' on the sequence). The broken part of the chain has been replaced by a straight segment, which may affect what knot types are detected - be careful with interpreting results.
Knot K +31

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Knot core range Knot core length Knot tails range Slipknot tails range Slipknot loops range N-end length C-end length Type
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+31 37-127 91 1-36, 128-138 36 11 knot
Chain Sequence
AEFDADVIVDARDCIMGRVASQVAEQALDGETVAVVNAERAVITGREEQIVEKYEKRVDIGNDNGYFYPKRPDGIFKRTIRGMLP-KKQRGREAFESVRVYLGNPYDT--------------------LGEISETLGA
Whole chain analysis

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Subchain analysis 

Knotoid cutoff: 0.5


Knotoid matrix content: 1


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Knot core range Knot core length Knot tails range Slipknot tails range Slipknot loops range N-end length C-end length Type
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3.1 13-108 96 1-12, 109-117 12 9 knot
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3.1 30-108 79 109-117 1-13 14-29 13 8 slipknot
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3.1 34-108 75 109-117 1-29 30-33 29 8 slipknot
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3.1 37-108 72 109-117 1-33 34-36 33 8 slipknot
How to cite
KnotProt | Interdisciplinary Laboratory of Biological Systems Modelling