1JV2A

Crystal structure of the extracellular segment of integrin alphavbeta3
Warning
  • Chain breaks within knot 31 (displayed as a gray area on the plot and as '-' on the sequence). The broken part of the chain has been replaced by a straight segment, which may affect what knot types are detected - be careful with interpreting results.
Genus: 140
Alphaknot: P06756
Slipknot S +31

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Knot core range Knot core length Knot tails range Slipknot tails range Slipknot loops range N-end length C-end length Type
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+31 810-903 94 904-956 1-768 769-809 768 52 slipknot
Chain Sequence
FNLDVDSPAEYSGPEGSYFGFAVDFFVPSASSRMFLLVGAPKANTTQPGIVEGGQVLKCDWSSTRRCQPIEFDATGNRDYAKDDPLEFKSHQWFGASVRSKQDKILACAPLYHWRTEMKQEREPVGTCFLQDGTKTVEYAPCRSQDIDADGQGFCQGGFSIDFTKADRVLLGGPGSFYWQGQLISDQVAEIVSKYDPNVYSIKYNNQLATRTAQAIFDDSYLGYSVAVGDFNGDGIDDFVSGVPRAARTLGMVYIYDGKNMSSLYNFTGEQMAAYFGFSVAATDINGDDYADVFIGAPLFMDRGSDGKLQEVGQVSVSLQRASGDFQTTKLNGFEVFARFGSAIAPLGDLDQDGFNDIAIAAPYGGEDKKGIVYIFNGRSTGLNAVPSQILEGQWAARSMPPSFGYSMKGATDIDKNGYPDLIVGAFGVDRAILYRARPVITVNAGLEVYPSILNQDNKTCSLPGTALKVSCFNVRFCLKADGKGVLPRKLNFQVELLLDKLKQKGAIRRALFLYSRSPSHSKNMTISRGGLMQCEELIAYLRDESEFRDKLTPITIFMEYRLDYRTAADTTGLQPILNQFTPANISRQAHILLDCGEDNVCKPKLEVSVDSDQKKIYIGDDNPLTLIVKAQNQGEGAYEAELIVSIPLQADFIGVVRNNEALARLSCAFKTENQTRQVVCDLGNPMKAGTQLLAGLRFSVHQQSEMDTSVKFDLQIQSSNLFDKVSPVVSHKVDLAVLAAVEIRGVSSPDHVFLPIPNWEHKENPETEEDVGPVVQHIYELRNNGPSSFSKAMLHLQWPYKYNNNTLLYILHYDIDGPMNCTSDMEINPLRIKISSL-----------------------------DIHTLGCGVAQCLKIVCQVGRLDRGKSAILYVKSLLWTETFMNKENQNHSYSLKSSASFNVIEFPYKNLPIEDITNSTLVTTNVTWGIQ
Whole chain analysis

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Subchain analysis 

Knotoid cutoff: 0.5


Knotoid matrix content: 1


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Knot core range Knot core length Knot tails range Slipknot tails range Slipknot loops range N-end length C-end length Type
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3.1m 800-874 75 875-927 1-769 770-799 769 52 slipknot
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3.1m 802-874 73 1-799, 891-927 800-801, 875-890 799 37 slipknot
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2.1m 803-877 75 1-801, 891-927 802-802, 878-890 801 37 slipknot
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2.1m 803-907 105 1-799, 923-927 800-802, 908-922 799 5 slipknot
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2.1m 803-922 120 1-799, 927-927 800-802, 923-926 799 1 slipknot
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2.1m 802-926 125 927-927 1-799 800-801 799 0 slipknot
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4.3 802-890 89 1-799, 897-927 800-801, 891-896 799 31 slipknot
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2.1m 803-890 88 1-801, 897-927 802-802, 891-896 801 31 slipknot
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2.1m 803-896 94 1-799, 908-927 800-802, 897-907 799 20 slipknot
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2.1m 819-883 65 1-806, 907-927 807-818, 884-906 806 21 slipknot
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2.1m 812-919 108 920-927 1-806 807-811 806 7 slipknot
How to cite
KnotProt | Interdisciplinary Laboratory of Biological Systems Modelling