1L5GA

Crystal structure of the extracellular segment of integrin avb3 in complex with an arg-gly-asp ligand
Warning
  • Chain breaks within knot 31 (displayed as a gray area on the plot and as '-' on the sequence). The broken part of the chain has been replaced by a straight segment, which may affect what knot types are detected - be careful with interpreting results.
Slipknot S +31
Knot core range Knot core length Knot tails range Slipknot tails range Slipknot loops range N-end length C-end length Type
view details
+31 810-903 94 904-956 1-768 769-809 768 52 slipknot
Chain Sequence
FNLDVDSPAEYSGPEGSYFGFAVDFFVPSASSRMFLLVGAPKANTTQPGIVEGGQVLKCDWSSTRRCQPIEFDATGNRDYAKDDPLEFKSHQWFGASVRSKQDKILACAPLYHWRTEMKQEREPVGTCFLQDGTKTVEYAPCRSQDIDADGQGFCQGGFSIDFTKADRVLLGGPGSFYWQGQLISDQVAEIVSKYDPNVYSIKYNNQLATRTAQAIFDDSYLGYSVAVGDFNGDGIDDFVSGVPRAARTLGMVYIYDGKNMSSLYNFTGEQMAAYFGFSVAATDINGDDYADVFIGAPLFMDRGSDGKLQEVGQVSVSLQRASGDFQTTKLNGFEVFARFGSAIAPLGDLDQDGFNDIAIAAPYGGEDKKGIVYIFNGRSTGLNAVPSQILEGQWAARSMPPSFGYSMKGATDIDKNGYPDLIVGAFGVDRAILYRARPVITVNAGLEVYPSILNQDNKTCSLPGTALKVSCFNVRFCLKADGKGVLPRKLNFQVELLLDKLKQKGAIRRALFLYSRSPSHSKNMTISRGGLMQCEELIAYLRDESEFRDKLTPITIFMEYRLDYRTAADTTGLQPILNQFTPANISRQAHILLDCGEDNVCKPKLEVSVDSDQKKIYIGDDNPLTLIVKAQNQGEGAYEAELIVSIPLQADFIGVVRNNEALARLSCAFKTENQTRQVVCDLGNPMKAGTQLLAGLRFSVHQQSEMDTSVKFDLQIQSSNLFDKVSPVVSHKVDLAVLAAVEIRGVSSPDHVFLPIPNWEHKENPETEEDVGPVVQHIYELRNNGPSSFSKAMLHLQWPYKYNNNTLLYILHYDIDGPMNCTSDMEINPLRIKISSL-----------------------------DIHTLGCGVAQCLKIVCQVGRLDRGKSAILYVKSLLWTETFMNKENQNHSYSLKSSASFNVIEFPYKNLPIEDITNSTLVTTNVTWGIQ
Whole chain analysis
Subchain analysis 

Knotoid cutoff: 0.5


Knotoid matrix content: 1

Knot core range Knot core length Knot tails range Slipknot tails range Slipknot loops range N-end length C-end length Type
view details
3.1m 795-875 81 876-927 1-769 770-794 769 51 slipknot
view details
3.1m 799-874 76 1-776, 888-927 777-798, 875-887 776 40 slipknot
view details
2.1m 803-917 115 918-927 1-794 795-802 794 9 slipknot
view details
3.1m 804-878 75 1-799, 905-927 800-803, 879-904 799 23 slipknot
view details
2.1m 807-887 81 1-803, 901-927 804-806, 888-900 803 27 slipknot
view details
2.1m 812-877 66 1-806, 900-927 807-811, 878-899 806 28 slipknot
view details
2.1m 812-902 91 1-807, 917-927 808-811, 903-916 807 11 slipknot
view details
2.1m 813-920 108 921-927 1-807 808-812 807 6 slipknot
view details
2.1m 820-889 70 1-811, 894-927 812-819, 890-893 811 34 slipknot
view details
2.1m 823-900 78 1-818, 906-927 819-822, 901-905 818 22 slipknot

KnotProt | Interdisciplinary Laboratory of Biological Systems Modelling