1ML5m

Structure of the e. coli ribosomal termination complex with release factor 2
Warning
  • Chain breaks within knot 31 (displayed as a gray area on the plot and as '-' on the sequence). The broken part of the chain has been replaced by a straight segment, which may affect what knot types are detected - be careful with interpreting results.
Knot K +31

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Knot core range Knot core length Knot tails range Slipknot tails range Slipknot loops range N-end length C-end length Type
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+31 38-127 90 1-37, 128-138 37 11 knot
Chain Sequence
AEFDADVIVDARDCIMGRVASQVAEQALDGETVAVVNAERAVITGREEQIVEKYEKRVDIGNDNGYFYPKRPDGIFKRTIRGMLP-KKQRGREAFESVRVYLGNPYDT--------------------LGEISETLGA
Whole chain analysis

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Subchain analysis 

Knotoid cutoff: 0.5


Knotoid matrix content: 1


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Knot core range Knot core length Knot tails range Slipknot tails range Slipknot loops range N-end length C-end length Type
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3.1 12-111 100 1-11, 112-117 11 6 knot
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3.1 19-111 93 112-117 1-11 12-18 11 5 slipknot
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2.1 36-106 71 107-117 1-13 14-35 13 10 slipknot
How to cite
KnotProt | Interdisciplinary Laboratory of Biological Systems Modelling