1MQSA

Crystal structure of sly1p in complex with an n-terminal peptide of sed5p
Warning
  • Chain breaks within knot 31 (displayed as a gray area on the plot and as '-' on the sequence). The broken part of the chain has been replaced by a straight segment, which may affect what knot types are detected - be careful with interpreting results.
Genus: 174
Slipknot S +31

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Knot core range Knot core length Knot tails range Slipknot tails range Slipknot loops range N-end length C-end length Type
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+31 327-518 192 1-326 546-653 519-545 326 108 slipknot
Chain Sequence
KDISLRDMQISAILKMLFLNKDLNNNDNITTITDDIFNQQEIIWKVLILDIKSTATISSVLRVNDLLKAGITVHSLIKQDRSPLPDVPAIYFVSPTKENIDIIVNDLKSDKYSEFYINFTSSLPRNLLEDLAQQVSITGKSDKIKQVYDQYLDFIVTEPELFSLEISNAYLTLNDPKTTEEEITGLCANIADGLFNTVLTINSIPIIRAAKGGPAEIIAEKLGTKLRDFVINTNS------------ERGVLIILDRNIDFASMFSHSWIYQCMVFDIFKLSRNTVTIPLATKKYDIEPND---------------FFWMENSHLPFPEAAENVEAALNTYKEEAAEITRKTEVVKKLPELTAKKNTIDTHMNIFAALL--------------------SQLESKSLDTFFEVEQDPGSTKTRSRFLDILKDGKTNNLEDKLRSFIVLYLTSTTGLPKDFVQNVENYFKENDYDINALKYVYKLREFMQLSNMSLQNKSLYGLTEGKLQGGVGSLISGIKKLLPEKKTIPITNVVDAIMDPLNSSQK------------------NLETTDSYLYIDPKITRGSHTRKPKRQSYNKSLVFVVGGGNYLEYQNLQEWAHSQLHNPKKVMYGSTAITTPAEFLNEISRLGASNSS
Whole chain analysis

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Subchain analysis 

Knotoid cutoff: 0.5


Knotoid matrix content: 1


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Knot core range Knot core length Knot tails range Slipknot tails range Slipknot loops range N-end length C-end length Type
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3.1 248-453 206 1-247 479-588 454-478 247 110 slipknot
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2.1 161-478 318 1-160 483-588 479-482 160 106 slipknot
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2.1 161-482 322 1-2, 484-588 3-160, 483-483 2 105 slipknot
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2.1 215-478 264 1-160, 483-588 161-214, 479-482 160 106 slipknot
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2.1 215-482 268 1-161, 484-588 162-214, 483-483 161 105 slipknot
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2.1 249-474 226 1-214, 484-588 215-248, 475-483 214 105 slipknot
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2.1 258-453 196 1-247, 479-588 248-257, 454-478 247 110 slipknot
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3.2 262-485 224 1-248, 539-588 249-261, 486-538 248 50 slipknot
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3.2 260-571 312 572-588 1-248 249-259 248 16 slipknot
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3.2 260-549 290 1-249, 566-588 250-259, 550-565 249 23 slipknot
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3.2 265-485 221 1-261, 539-588 262-264, 486-538 261 50 slipknot
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3.1 287-454 168 1-262, 472-588 263-286, 455-471 262 117 slipknot
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3.1 287-471 185 1-262, 479-588 263-286, 472-478 262 110 slipknot
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2.1 300-456 157 1-286, 479-588 287-299, 457-478 286 110 slipknot
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2.1 299-478 180 1-284, 483-588 285-298, 479-482 284 106 slipknot
How to cite
KnotProt | Interdisciplinary Laboratory of Biological Systems Modelling