1N2MA

The s53a proenzyme structure of methanococcus jannaschii.
Slipknot S +31
Knot core range Knot core length Knot tails range Slipknot tails range Slipknot loops range N-end length C-end length Type
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+31 12-69 58 1-11 156-159 70-155 11 4 slipknot
Chain Sequence
PLHAYFKLPNTVSLVAGSSEGETPLNAFDGALLNAGIGNVNLIRISAIMPPEAEIVPLPKLPMGALVPTAYGYIISDVPGETISAAISVAIPKDKSLCGLIMEYEGKCSKKEAEKTVREMAKIGFEMRGWELDRIESIAVEHTVEKLGCAFAAAALWYK
Whole chain analysis
Subchain analysis 

Knotoid cutoff: 0.5


Knotoid matrix content: 1

Knot core range Knot core length Knot tails range Slipknot tails range Slipknot loops range N-end length C-end length Type
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3.1 12-71 60 1-11 153-159 72-152 11 7 slipknot
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3.1 14-71 58 1-11, 149-159 12-13, 72-148 11 11 slipknot
view details
2.1 15-78 64 1-13, 148-159 14-14, 79-147 13 12 slipknot
sequence length 159
structure length 159
publication title Pyruvoyl-Dependent Arginine Decarboxylase from Methanococcus jannaschii: Crystal Structures of the Self-Cleaved and S53A Proenzyme Forms
pubmed doi rcsb
molecule tags Lyase
molecule keywords Pyruvoyl-dependent arginine decarboxylase
source organism Methanocaldococcus jannaschii
total genus Genus: 40
ec nomenclature ec 4.1.1.19: Arginine decarboxylase.
pdb deposition date 2002-10-23
KnotProt deposition date 2014-10-11

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01862 PvlArgDC Pyruvoyl-dependent arginine decarboxylase (PvlArgDC)
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.50.20.10 Alpha Beta 3-Layer(bba) Sandwich Pyruvoyl-Dependent Histidine Decarboxylase; Chain B Pyruvoyl-Dependent Histidine Decarboxylase, subunit B 1n2mA00
2QQDC 1N2MA
chains in the KnotProt database with same CATH superfamily
2QQDC 1N2MA
chains in the KnotProt database with same CATH topology
2QQDC 1N2MA
chains in the KnotProt database with same CATH homology


 
#chains in the KnotProt database with same CATH superfamily
 2QQD C;  1N2M A; 
#chains in the KnotProt database with same CATH topology
 2QQD C;  1N2M A; 
#chains in the KnotProt database with same CATH homology
 2QQD C;  1N2M A; 
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similar chains in the KnotProt database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the KnotProt database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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