| Knot core range | Knot core length | Knot tails range | Slipknot tails range | Slipknot loops range | N-end length | C-end length | Type | |||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| view details |
 |
+31 | 174-259 | 86 | 1-173 | 274-502 | 260-273 | 173 | 229 | slipknot |
Chain Sequence |
TEGIDYGDTMVVWPSTGRIPGG------------SMPPGWGDYSPQGIALVQSVLFPGIIRRIILDKELEEGDWSGWSVSVHSPWGNEKVSAARTVLENGLRGGLPEPSRPAAVSFARLEPASGNEQKIIRLMVTQQLEQVTDIPASQLPAAGNNVPVKYRLTDLMQNGTQYMAIIGGIPMTVPVVDAVPVPDRSRPGTNIKDVYSAPVSPNLPDLVLSVGQMNTPVRSNPEIQEDGVISETGNYVEAGYTMSSNNHDVIVRFPEGSGVSPLYISAVEILDSNSLSQRQEAENNAKDDFRVKKEQENDEKTVLTKTSEVIISVGDKVGEYLGDKYKALSREIAENINNFQGKTIRSYDDAMSSINKLMANPSLKINATDKEAIVNAWKAFNAEDMGNKFAALGKTFKAADYAIKANNIREKSIEGYQTGNWGPLMLEVESWVISGMASAVALSLFSLTLGSALIAFGLSATVVGFVGVVIAGAIGAFIDDKFVDELNHKIIK
|
Knotoid cutoff: 0.5
Knotoid matrix content: 1
| Knot core range | Knot core length | Knot tails range | Slipknot tails range | Slipknot loops range | N-end length | C-end length | Type | |||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| view details |
 |
3.1 | 42-248 | 207 | 1-18, 261-490 | 19-41, 249-260 | 18 | 230 | slipknot | |||
| view details |
|
3.1 | 64-249 | 186 | 1-47, 260-490 | 48-63, 250-259 | 47 | 231 | slipknot | |||
| view details |
 |
2.1 | 73-250 | 178 | 1-63, 260-490 | 64-72, 251-259 | 63 | 231 | slipknot | |||
| view details |
|
3.1 | 119-249 | 131 | 1-105, 258-490 | 106-118, 250-257 | 105 | 233 | slipknot | |||
| view details |
|
2.1 | 124-249 | 126 | 1-118, 258-490 | 119-123, 250-257 | 118 | 233 | slipknot |
| sequence length |
502
|
| structure length |
490
|
| publication title |
Crystal structure of the cytotoxic bacterial protein colicin B at 2.5 A resolution
pubmed doi rcsb |
| molecule tags |
Antibiotic
|
| molecule keywords |
Colicin B
|
| source organism |
Escherichia coli
|
| missing residues |
23-34
|
| total genus |
 Genus: 139
|
| ec nomenclature | |
| pdb deposition date | 2003-11-13 |
| KnotProt deposition date | 2014-07-31 |
| chain | Pfam Accession Code | Pfam Family Identifier | Pfam Description |
|---|---|---|---|
| A | PF01024 | Colicin | Colicin pore forming domain |
Image from the rcsb pdb (www.rcsb.org)
cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Mainly Alpha | Orthogonal Bundle | Globin-like | Colicin |
#chains in the KnotProt database with same CATH superfamily 1RH1 A; #chains in the KnotProt database with same CATH topology 1RH1 A; #chains in the KnotProt database with same CATH homology 1RH1 A;
#similar chains in the KnotProt database (?% sequence similarity) ...loading similar chains, please wait... #similar chains, but unknotted ...loading similar chains, please wait... #similar chains in the pdb database (?% sequence similarity) ...loading similar chains, please wait...
