1RH1A

Crystal structure of the cytotoxic bacterial protein colicin b at 2.5 a resolution
Slipknot S +31 +31 +31 +31
Knot core range Knot core length Knot tails range Slipknot tails range Slipknot loops range N-end length C-end length Type
view details
+31 174-259 86 1-173 274-502 260-273 173 229 slipknot
Chain Sequence
TEGIDYGDTMVVWPSTGRIPGG------------SMPPGWGDYSPQGIALVQSVLFPGIIRRIILDKELEEGDWSGWSVSVHSPWGNEKVSAARTVLENGLRGGLPEPSRPAAVSFARLEPASGNEQKIIRLMVTQQLEQVTDIPASQLPAAGNNVPVKYRLTDLMQNGTQYMAIIGGIPMTVPVVDAVPVPDRSRPGTNIKDVYSAPVSPNLPDLVLSVGQMNTPVRSNPEIQEDGVISETGNYVEAGYTMSSNNHDVIVRFPEGSGVSPLYISAVEILDSNSLSQRQEAENNAKDDFRVKKEQENDEKTVLTKTSEVIISVGDKVGEYLGDKYKALSREIAENINNFQGKTIRSYDDAMSSINKLMANPSLKINATDKEAIVNAWKAFNAEDMGNKFAALGKTFKAADYAIKANNIREKSIEGYQTGNWGPLMLEVESWVISGMASAVALSLFSLTLGSALIAFGLSATVVGFVGVVIAGAIGAFIDDKFVDELNHKIIK
Whole chain analysis
Subchain analysis 

Knotoid cutoff: 0.5


Knotoid matrix content: 1

Knot core range Knot core length Knot tails range Slipknot tails range Slipknot loops range N-end length C-end length Type
view details
3.1 42-248 207 1-18, 261-490 19-41, 249-260 18 230 slipknot
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3.1 64-249 186 1-47, 260-490 48-63, 250-259 47 231 slipknot
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2.1 73-250 178 1-63, 260-490 64-72, 251-259 63 231 slipknot
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3.1 119-249 131 1-105, 258-490 106-118, 250-257 105 233 slipknot
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2.1 124-249 126 1-118, 258-490 119-123, 250-257 118 233 slipknot
missing residues 23-34
publication title Crystal structure of the cytotoxic bacterial protein colicin B at 2.5 A resolution
pubmed doi rcsb
structure length 490
molecule tags Antibiotic
source organism Escherichia coli
sequence length 502
total genus Genus: 139
molecule keywords Colicin B
ec nomenclature
pdb deposition date 2003-11-13
KnotProt deposition date 2014-07-31

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01024 Colicin Colicin pore forming domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.490.30 Mainly Alpha Orthogonal Bundle Globin-like Colicin 1rh1A02
1RH1A
chains in the KnotProt database with same CATH superfamily
1RH1A
chains in the KnotProt database with same CATH topology
1RH1A
chains in the KnotProt database with same CATH homology


 
#chains in the KnotProt database with same CATH superfamily
 1RH1 A; 
#chains in the KnotProt database with same CATH topology
 1RH1 A; 
#chains in the KnotProt database with same CATH homology
 1RH1 A; 
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similar chains in the KnotProt database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the KnotProt database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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