| Knot core range | Knot core length | Knot tails range | Slipknot tails range | Slipknot loops range | N-end length | C-end length | Type | |||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| view details |
 |
+31 | 224-408 | 185 | 1-223 | 425-432 | 409-424 | 223 | 8 | slipknot |
Chain Sequence |
TFEEFKDRLFALAKKNGVEVQISFLETREFSLRLANGDLDQYTDAGKFNVEIKVLKDGKTGTFRTQVLENPEKCFEEALSNLQVK----KEYFFEGGKEYREMETYVGRFEKLSVKEKMDMAKKAHESAAKDERVVMVPTVMYKDMVIKKIITNTLGLDVESQMDGGFLFAMAIARDANPRSGSWYELARTPEDLNPEEIGKRAAEEAISLIGSKTIPSGKYPVLMRNTALLDLMEMFIPMISAENVQKNLSPLKGKLGEQVGNPAVSIKDLPYHPKGLSSTPFDDEGVPTTEKFVLENGVLKTFLHNLKTARKEGVEPTGNGFVGGIRPVNLMLMPGEKSFEELLKEMDRGVVITEVEGMHAGANSISGEFSLFAKGYWVENGEIAHGVEDITISGNFLDLLRKIVLVGNDVKVSQHTIAPSVLVEVLDVA
|
Knotoid cutoff: 0.5
Knotoid matrix content: 1
| Knot core range | Knot core length | Knot tails range | Slipknot tails range | Slipknot loops range | N-end length | C-end length | Type | |||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| view details |
 |
3.1 | 168-406 | 239 | 1-69, 419-428 | 70-167, 407-418 | 69 | 10 | slipknot | |||
| view details |
|
3.1 | 169-406 | 238 | 1-167, 419-428 | 168-168, 407-418 | 167 | 10 | slipknot | |||
| view details |
|
3.1 | 175-406 | 232 | 1-168, 418-428 | 169-174, 407-417 | 168 | 11 | slipknot |
| sequence length |
432
|
| structure length |
428
|
| publication title |
Crystal structure of a putative modulator of DNA gyrase (pmbA) from Thermotoga maritima at 1.95 A resolution reveals a new fold.
pubmed doi rcsb |
| molecule tags |
Gene regulation
|
| molecule keywords |
pmbA-related protein
|
| source organism |
Thermotoga maritima
|
| missing residues |
86-89
|
| total genus |
 Genus: 131
|
| ec nomenclature | |
| pdb deposition date | 2004-07-09 |
| KnotProt deposition date | 2014-07-31 |
| chain | Pfam Accession Code | Pfam Family Identifier | Pfam Description |
|---|---|---|---|
| A | PF01523 | PmbA_TldD | Putative modulator of DNA gyrase |
Image from the rcsb pdb (www.rcsb.org)
cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Alpha Beta | 2-Layer Sandwich | PmbA/TldD fold | PmbA/TldD superfamily |
#chains in the KnotProt database with same CATH superfamily 1VL4 A; 1VPB A; #chains in the KnotProt database with same CATH topology 1VL4 A; 1VPB A; #chains in the KnotProt database with same CATH homology 1VL4 A; 1VPB A;
#similar chains in the KnotProt database (?% sequence similarity) ...loading similar chains, please wait... #similar chains, but unknotted ...loading similar chains, please wait... #similar chains in the pdb database (?% sequence similarity) ...loading similar chains, please wait...
