1VL4A

Crystal structure of a putative modulator of a dna gyrase (tm0727) from thermotoga maritima msb8 at 1.95 a resolution
Slipknot S +31
Knot core range Knot core length Knot tails range Slipknot tails range Slipknot loops range N-end length C-end length Type
view details
+31 224-408 185 1-223 425-432 409-424 223 8 slipknot
Chain Sequence
TFEEFKDRLFALAKKNGVEVQISFLETREFSLRLANGDLDQYTDAGKFNVEIKVLKDGKTGTFRTQVLENPEKCFEEALSNLQVK----KEYFFEGGKEYREMETYVGRFEKLSVKEKMDMAKKAHESAAKDERVVMVPTVMYKDMVIKKIITNTLGLDVESQMDGGFLFAMAIARDANPRSGSWYELARTPEDLNPEEIGKRAAEEAISLIGSKTIPSGKYPVLMRNTALLDLMEMFIPMISAENVQKNLSPLKGKLGEQVGNPAVSIKDLPYHPKGLSSTPFDDEGVPTTEKFVLENGVLKTFLHNLKTARKEGVEPTGNGFVGGIRPVNLMLMPGEKSFEELLKEMDRGVVITEVEGMHAGANSISGEFSLFAKGYWVENGEIAHGVEDITISGNFLDLLRKIVLVGNDVKVSQHTIAPSVLVEVLDVA
Whole chain analysis
Subchain analysis 

Knotoid cutoff: 0.5


Knotoid matrix content: 1

Knot core range Knot core length Knot tails range Slipknot tails range Slipknot loops range N-end length C-end length Type
view details
3.1 168-406 239 1-69, 419-428 70-167, 407-418 69 10 slipknot
view details
3.1 169-406 238 1-167, 419-428 168-168, 407-418 167 10 slipknot
view details
3.1 175-406 232 1-168, 418-428 169-174, 407-417 168 11 slipknot
missing residues 86-89
publication title Crystal structure of a putative modulator of DNA gyrase (pmbA) from Thermotoga maritima at 1.95 A resolution reveals a new fold.
pubmed doi rcsb
structure length 428
molecule tags Gene regulation
source organism Thermotoga maritima
sequence length 432
total genus Genus: 131
molecule keywords pmbA-related protein
ec nomenclature
pdb deposition date 2004-07-09
KnotProt deposition date 2014-07-31

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01523 PmbA_TldD Putative modulator of DNA gyrase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.2290.10 Alpha Beta 2-Layer Sandwich PmbA/TldD fold PmbA/TldD superfamily 1vl4A01
1VPBA 1VL4A
chains in the KnotProt database with same CATH superfamily
1VPBA 1VL4A
chains in the KnotProt database with same CATH topology
1VPBA 1VL4A
chains in the KnotProt database with same CATH homology


 
#chains in the KnotProt database with same CATH superfamily
 1VPB A;  1VL4 A; 
#chains in the KnotProt database with same CATH topology
 1VPB A;  1VL4 A; 
#chains in the KnotProt database with same CATH homology
 1VPB A;  1VL4 A; 
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similar chains in the KnotProt database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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#similar chains, but unknotted
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