| Knot core range | Knot core length | Knot tails range | Slipknot tails range | Slipknot loops range | N-end length | C-end length | Type | |||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| view details |
 |
+31 | 237-413 | 177 | 1-236 | 430-439 | 414-429 | 236 | 10 | slipknot |
Chain Sequence |
MITDENKKLAQWAMDYALKNGCQAAKVLLYSSSNTSFELRD--MDRLQQASEGGLSLSLYVDGRYGSISTNRLNRKELETFIKNGIDSTRYLAKDEARVLADPSRYYKGGKPDLKLYDAKFASLNPDDKIEMAKAVAEEALGKDERIISVGSSYGDGEDFAYRLISNGFEGETKSTWYSLSADITIRGEGEARPSAYWYESSLYMNDLIKKGIGQKALERVLRKLGQKKVQSGKYTMVVDPMNSSRLLSPMISALNGSALQQKNSFLLNKLNEKIASDRLTLTDEPHLVKASGARYFDNEGIATERRSIFDKGVLNTYFIDTYNAKKMGVDPTISGSSILVMETGDKNLDGLIAGVEKGILVTGFNGGNNNSSTGDFSYGIEGFLIENGKLTQPVSEMNVTGNLITLWNSLVATGNDPRLNSSWRIPSLVFEGVDFSGL
|
Knotoid cutoff: 0.5
Knotoid matrix content: 1
| Knot core range | Knot core length | Knot tails range | Slipknot tails range | Slipknot loops range | N-end length | C-end length | Type | |||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| view details |
 |
3.1 | 227-412 | 186 | 1-226 | 424-437 | 413-423 | 226 | 14 | slipknot | ||
| view details |
|
3.1 | 227-423 | 197 | 1-226 | 426-437 | 424-425 | 226 | 12 | slipknot | ||
| view details |
 |
2.1 | 233-421 | 189 | 1-232 | 429-437 | 422-428 | 232 | 9 | slipknot | ||
| view details |
|
2.1 | 233-409 | 177 | 1-123, 417-437 | 124-232, 410-416 | 123 | 21 | slipknot |
| sequence length |
439
|
| structure length |
437
|
| publication title |
Crystal structure of Putative modulator of DNA gyrase (bt3649) from Bacteroides thetaiotaomicron vpi-5482 at 1.75 A resolution
rcsb |
| molecule tags |
Hydrolase
|
| molecule keywords |
putative modulator of DNA gyrase
|
| source organism |
Bacteroides thetaiotaomicron
|
| missing residues |
42-43
|
| total genus |
 Genus: 129
|
| ec nomenclature | |
| pdb deposition date | 2004-10-15 |
| KnotProt deposition date | 2014-07-31 |
| chain | Pfam Accession Code | Pfam Family Identifier | Pfam Description |
|---|---|---|---|
| A | PF01523 | PmbA_TldD | Putative modulator of DNA gyrase |
Image from the rcsb pdb (www.rcsb.org)
cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Alpha Beta | 2-Layer Sandwich | PmbA/TldD fold | PmbA/TldD superfamily |
#chains in the KnotProt database with same CATH superfamily 1VL4 A; 1VPB A; #chains in the KnotProt database with same CATH topology 1VL4 A; 1VPB A; #chains in the KnotProt database with same CATH homology 1VL4 A; 1VPB A;
#similar chains in the KnotProt database (?% sequence similarity) ...loading similar chains, please wait... #similar chains, but unknotted ...loading similar chains, please wait... #similar chains in the pdb database (?% sequence similarity) ...loading similar chains, please wait...
