1YL3M

Crystal structure of 70s ribosome with thrs operator and trnas. large subunit. the coordinates for the small subunit are in the pdb entry 1yl4.
Warning
  • Chain breaks within knot 31 (displayed as a gray area on the plot and as '-' on the sequence). The broken part of the chain has been replaced by a straight segment, which may affect what knot types are detected - be careful with interpreting results.
Knot K +31

  Help Knotting data interpretation Full screen
Knot core range Knot core length Knot tails range Slipknot tails range Slipknot loops range N-end length C-end length Type
view details
+31 37-127 91 1-36, 128-138 36 11 knot
Chain Sequence
AEFDADVIVDARDCIMGRVASQVAEQALDGETVAVVNAERAVITGREEQIVEKYEKRVDIGNDNGYFYPKRPDGIFKRTIRGMLP-KKQRGREAFESVRVYLGNPYDT--------------------LGEISETLGA
Whole chain analysis

  Help Knotoid data interpretation Full screen
Subchain analysis 

Knotoid cutoff: 0.5


Knotoid matrix content: 1


  Help Knotoid subchains data interpretation Full screen
Knot core range Knot core length Knot tails range Slipknot tails range Slipknot loops range N-end length C-end length Type
view details
2.1 24-107 84 1-23, 108-117 23 10 knot
view details
3.1 30-111 82 112-117 1-23 24-29 23 5 slipknot
view details
3.1 36-106 71 1-24, 113-117 25-35, 107-112 24 5 slipknot
How to cite
KnotProt | Interdisciplinary Laboratory of Biological Systems Modelling