1YTD | KnotProt

Cysteine knot

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Help Cysteine knot data interpretation Full screen

				Loop	Piercing
view details				330-c-333-b-350-c-350	330-b-348

Chain Sequence

MNVFNTASDEDIKKGLASDVYFERTISAIGDKCNDLRVAMEATVSGPLDTWINFTGLDEVLKLLEGLDVDLYAIPEGTILFPRDANGLPVPFIRVEGRYCDFGMYETAILGFICQASGISTKASKVRLAAGDSPFFSFGIRRMHPAISPMIDRSAYIGGADGVSGILGAKLIDQDPVGTMPHALSIMLGDEEAWKLTLENTKNGQKSVLLIDTYMDEKFAAIKIAEMFDKVDYIRLDTPSSRRGNFEALIREVRWELALRGRSDIKIMVSGGLDENTVKKLREAGAEAFGVGTSISSAKPFDFAMDIVEVNGKPETKRGKMSGRKNVLRCTSCHRIEVVPANVQEKTCICGGSMQNLLVKYLSHGKRTSEYPRPKEIRSRSMKELEYFK

sequence length	389
structure length	389
publication title	Crystal structure of a nicotinate phosphoribosyltransferase from Thermoplasma acidophilum. pubmed doi rcsb
molecule tags	Transferase
molecule keywords	nicotinate phosphoribosyltransferase from Thermoplasma acido
source organism	Thermoplasma acidophilum
ec nomenclature	ec 6.3.4.21: Nicotinate phosphoribosyltransferase.
pdb deposition date	2005-02-10

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
3.20.20.70	Alpha Beta	Alpha-Beta Barrel	TIM Barrel	Aldolase class I	1ytdA02
3.90.1170.20	Alpha Beta	Alpha-Beta Complex	Aldehyde Oxidoreductase; domain 3	Aldehyde Oxidoreductase; domain 3	1ytdA01

3CWOX 1YTDA 1JR1A
chains in the KnotProt database with same CATH superfamily

3CWOX 1YTDA 1JR1A
chains in the KnotProt database with same CATH topology

3CWOX 1YTDA 1JR1A
chains in the KnotProt database with same CATH homology

#chains in the KnotProt database with same CATH superfamily
 3CWO X;  1YTD A;  1JR1 A; 
#chains in the KnotProt database with same CATH topology
 3CWO X;  1YTD A;  1JR1 A; 
#chains in the KnotProt database with same CATH homology
 3CWO X;  1YTD A;  1JR1 A;

None 1YTEA 1YTKA 2I14A 2I1OA
similar chains in the KnotProt database (40% sequence similarity)

None
similar chains in the pdb database (40% sequence similarity)

#similar chains in the KnotProt database (40% sequence similarity)

#similar chains, but unknotted
2I1O A; 
#similar chains in the pdb database (40% sequence similarity)