2HJNA

Structural and functional analysis of saccharomyces cerevisiae mob1
Warning
  • Chain breaks within knot 31 (displayed as a gray area on the plot and as '-' on the sequence). The broken part of the chain has been replaced by a straight segment, which may affect what knot types are detected - be careful with interpreting results.
Genus: 63
Slipknot S +31

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Knot core range Knot core length Knot tails range Slipknot tails range Slipknot loops range N-end length C-end length Type
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+31 34-203 170 204-233 1-17 18-33 17 29 slipknot
Chain Sequence
PVLTT------------NVTDFNYTPSHQKPFLDIKQIVEMTLGS------------EGVAVKLPRGEDENEWLAVHCVDFYNQ---INMLYGSITEFCSPQTCPRMIATNEYEYLWAFQKGQPPVSVSAPKYVECLMRWCQDQFDDESLFPSKVTGTFPEGFIQRVIQPILRRLFRVYAHIYCHHFNEILELNLQTVLNTSFRHFCLFAQEFELLRPADFGPLLELVMELRD
Whole chain analysis

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Subchain analysis 

Knotoid cutoff: 0.5


Knotoid matrix content: 1


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Knot core range Knot core length Knot tails range Slipknot tails range Slipknot loops range N-end length C-end length Type
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2.1 22-171 150 1-5, 184-206 6-21, 172-183 5 23 slipknot
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3.1 21-183 163 1-5, 206-206 6-20, 184-205 5 1 slipknot
sequence length 233
structure length 206
publication title Structural and Functional Analysis of Saccharomyces cerevisiae Mob1.
pubmed doi rcsb
molecule tags Cell cycle
molecule keywords Maintenance of ploidy protein MOB1
missing residues 6-17, 34-45, 61-63
total genus Genus: 63
ec nomenclature
pdb deposition date 2006-06-30
KnotProt deposition date 2014-07-31

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF03637 Mob1_phocein Mob1/phocein family
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.20.140.30 Mainly Alpha Up-down Bundle Butyryl-CoA Dehydrogenase, subunit A; domain 3 Mob1/phocein 2hjnA00
2HJNA
chains in the KnotProt database with same CATH superfamily
2HJNA
chains in the KnotProt database with same CATH topology
2HJNA
chains in the KnotProt database with same CATH homology

  
#chains in the KnotProt database with same CATH superfamily
 2HJN A; 
#chains in the KnotProt database with same CATH topology
 2HJN A; 
#chains in the KnotProt database with same CATH homology
 2HJN A;
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similar chains in the KnotProt database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

  
#similar chains in the KnotProt database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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How to cite
KnotProt | Interdisciplinary Laboratory of Biological Systems Modelling