| Knot core range | Knot core length | Knot tails range | Slipknot tails range | Slipknot loops range | N-end length | C-end length | Type | |||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| view details |
 |
41 | 30-271 | 242 | 1-29, 272-319 | 29 | 48 | knot |
Chain Sequence |
DPLPFFPPLYLGGPEITTENCEREPIHIPGSIQPHGALLTADGHSGEVLQMSLNAATFLGQEPTVLRGQTLAALLPEQWPALQAALPPGCPDALQYRATLDWPAAGHLSLTVHRVGELLILEFEPTEAWDSTGPHALRNAMFALESAPNLRALAEVATQTVRELTGFDRVMLYKFAPDATGEVIAEARREGLHAFLGHRFPASDIPAQARALYTRHLLRLTADTRAAAVPLDPVLNPQTNAPTPLGGAVLRATSPMHMQYLRNMGVGSSLSVSVVVGGQLWGLIACHHQTPYVLPPDLRTTLESLGRLLSLQVQVKEAH
|
Knotoid cutoff: 0.5
Knotoid matrix content: 1
| Knot core range | Knot core length | Knot tails range | Slipknot tails range | Slipknot loops range | N-end length | C-end length | Type | |||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| view details |
 |
4.1 | 26-309 | 284 | 1-25, 310-319 | 25 | 10 | knot | ||||
| view details |
|
4.1 | 8-274 | 267 | 1-7 | 281-319 | 275-280 | 7 | 39 | slipknot | ||
| view details |
|
4.1 | 28-279 | 252 | 1-27 | 290-319 | 280-289 | 27 | 30 | slipknot | ||
| view details |
 |
3.2m | 30-281 | 252 | 1-29 | 310-319 | 282-309 | 29 | 10 | slipknot | ||
| view details |
|
4.1 | 17-274 | 258 | 1-8, 280-319 | 9-16, 275-279 | 8 | 40 | slipknot | |||
| view details |
|
4.1 | 26-273 | 248 | 1-20, 280-319 | 21-25, 274-279 | 20 | 40 | slipknot | |||
| view details |
|
3.2m | 30-267 | 238 | 1-22, 279-319 | 23-29, 268-278 | 22 | 41 | slipknot | |||
| view details |
 |
3.2 | 34-312 | 279 | 313-319 | 1-27 | 28-33 | 27 | 6 | slipknot |
| sequence length |
319
|
| structure length |
319
|
| publication title |
High resolution structure of deinococcus bacteriophytochrome yields new insights into phytochrome architecture and evolution.
pubmed doi rcsb |
| molecule tags |
Transferase
|
| molecule keywords |
Bacteriophytochrome
|
| source organism |
Deinococcus radiodurans
|
| total genus |
 Genus: 91
|
| ec nomenclature |
ec
2.7.13.3: Histidine kinase. |
| pdb deposition date | 2006-12-13 |
| KnotProt deposition date | 2014-07-31 |
| chain | Pfam Accession Code | Pfam Family Identifier | Pfam Description |
|---|---|---|---|
| A | PF01590 | GAF | GAF domain |
Image from the rcsb pdb (www.rcsb.org)
cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Alpha Beta | 2-Layer Sandwich | Beta-Lactamase | Beta-Lactamase |
#chains in the KnotProt database with same CATH superfamily 2O9B A; 1ZTU A; 2O9C A; #chains in the KnotProt database with same CATH topology 2O9B A; 1ZTU A; 2O9C A; #chains in the KnotProt database with same CATH homology 2O9B A; 1ZTU A; 2O9C A;
#similar chains in the KnotProt database (?% sequence similarity) ...loading similar chains, please wait... #similar chains, but unknotted ...loading similar chains, please wait... #similar chains in the pdb database (?% sequence similarity) ...loading similar chains, please wait...
