2QR0V

Structure of vegf complexed to a fab containing tyr and ser in the cdrs
Cysteine knot
Loop Piercing
view details
57-c-61-b-104-c-102 26-b-68
Chain Sequence
EVVKFMDVYQRSYCHPIETLVDIFQEYPDEIEYIFKPSCVPLMRCGGCCNDEGLECVPTEESNITMQIMRIKPHQGQHIGEMSFLQHNKCECRPKKD
sequence length 97
structure length 97
publication title High-throughput generation of synthetic antibodies from highly functional minimalist phage-displayed libraries
pubmed doi rcsb
molecule tags Immune system
molecule keywords Fab-Fragment Light Chain
ec nomenclature
pdb deposition date 2007-07-27
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.10.90.10 Mainly Beta Ribbon Cystine Knot Cytokines, subunit B Cystine-knot cytokines 2qr0V00
2FJHV 1BNDB 1TGJA 3FUBD 1FZVB 3HH2B 1NYSB 2P6AB 2VPFF 2GH0C 1E9JA 2GYRD 2QJBB 2ASKA 2XACB 3QTKA 2FJGW 1PDGB 2QCWB 2FJHW 2QR0C 2VPFB 3KFDD 2QR0O 1VPFC 1MJVB 2GNNA 1REUA 1LXIA 2GOOD 3MJGB 2QR0P 1FL7D 1QFWA 2QR0J 2QJ9A 2R53B 2QJAB 1NYUB 1NT3A 1KLCB 1VPPW 1B8MA 2TGIA 2VPFD 3B4VF 2X1WA 1DZ7A 1RV6V 1S4YB 1XWDA 2GYZA 1ZKZA 3EO1I 3B4VB 3KFDB 2ARPA 2B0UB 1KLAB 1LX5A 2H62A 1WQ8A 2GNNC 1NYUD 1FL7B 2X1XE 2ARVB 2GYRA 1S4YD 1FLTV 1KATV 1HRPA 2BHKA 2H64A 1QTYV 1CZ8V 2QR0U 2X1WC 1BNDA 3EO1L 1AGQB 3QTKE 1HCNB 1FZVA 1REWB 3HH2A 2GOOA 1B98A 2P6AA 3BMPA 3EVSB 2QJBA 2PJYA 1KATW 2XACA 1BTGB 1QTYW 1CZ8W 2QCWA 1PDGA 2GYRC 2VPFA 2QCQB 2VWEB 1AGQD 2R52B 2C7WB 1MJVA 3MJGA 1WQ9B 3KFDC 3QTKD 2VPFG 1AOCB 1SGFB 1XWDE 2R53A 2QR0I 1KTZA 2QJAA 3BK3B 1FL7C 1KLCA 1RV6W 1VPFB 1M4UL 1TGKA 1WAQA 1PDGC 1HD4A 2VPFC 2GH0D 2V5EB 3B4VA 3QTKF 3KFDA 2B0UA 1SGFY 1KLAA 1TFGA 2QR0D 1ES7C 2ASKB 1FL7A 3QTKB 1TZHV 1FLTW 1VPFD 2ARVA 3BDYV 1TZIV 1QTYS 2FJGV 2GNNB 1BJ1V 1AGQA 2XV7A 1QFWB 1HCNA 3EO1C 1REWA 2QJ9B 1ES7A 1TZHW 2QR0V 2VPFE 1VPPV 2X1WB 1XWDB 1BJ1W 2GNND 2QCQA 2VWEA 2R52A 1BMPA 2C7WA 2VPFH 2GYRF 2H62B 1WQ9A 3FUBB 1AGQC 2GYRE 1AOCA 3BK3A 2GYRB 2X1WD 1XWDD 3QTKC 1HRPB 1QTYR 3B4VE 1VPFA
chains in the KnotProt database with same CATH superfamily
2FJHV 1BNDB 1TGJA 3FUBD 1FZVB 3HH2B 1NYSB 2P6AB 2VPFF 2GH0C 1E9JA 2GYRD 2QJBB 2ASKA 2XACB 3QTKA 2FJGW 1PDGB 2QCWB 2FJHW 2QR0C 2VPFB 3KFDD 2QR0O 1VPFC 1MJVB 2GNNA 1REUA 1LXIA 2GOOD 3MJGB 2QR0P 1FL7D 1QFWA 2QR0J 2QJ9A 2R53B 2QJAB 1NYUB 1NT3A 1KLCB 1VPPW 1B8MA 2TGIA 2VPFD 3B4VF 2X1WA 1DZ7A 1RV6V 1S4YB 1XWDA 2GYZA 1ZKZA 3EO1I 3B4VB 3KFDB 2ARPA 2B0UB 1KLAB 1LX5A 2H62A 1WQ8A 2GNNC 1NYUD 1FL7B 2X1XE 2ARVB 2GYRA 1S4YD 1FLTV 1KATV 1HRPA 2BHKA 2H64A 1QTYV 1CZ8V 2QR0U 2X1WC 1BNDA 3EO1L 1AGQB 3QTKE 1HCNB 1FZVA 1REWB 3HH2A 2GOOA 1B98A 2P6AA 3BMPA 3EVSB 2QJBA 2PJYA 1KATW 2XACA 1BTGB 1QTYW 1CZ8W 2QCWA 1PDGA 2GYRC 2VPFA 2QCQB 2VWEB 1AGQD 2R52B 2C7WB 1MJVA 3MJGA 1WQ9B 3KFDC 3QTKD 2VPFG 1AOCB 1SGFB 1XWDE 2R53A 2QR0I 1KTZA 2QJAA 3BK3B 1FL7C 1KLCA 1RV6W 1VPFB 1M4UL 1TGKA 1WAQA 1PDGC 1HD4A 2VPFC 2GH0D 2V5EB 3B4VA 3QTKF 3KFDA 2B0UA 1SGFY 1KLAA 1TFGA 2QR0D 1ES7C 2ASKB 1FL7A 3QTKB 1TZHV 1FLTW 1VPFD 2ARVA 3BDYV 1TZIV 1QTYS 2FJGV 2GNNB 1BJ1V 1AGQA 2XV7A 1QFWB 1HCNA 3EO1C 1REWA 2QJ9B 1ES7A 1TZHW 2QR0V 2VPFE 1VPPV 2X1WB 1XWDB 1BJ1W 2GNND 2QCQA 2VWEA 2R52A 1BMPA 2C7WA 2VPFH 2GYRF 2H62B 1WQ9A 3FUBB 1AGQC 2GYRE 1AOCA 3BK3A 2GYRB 2X1WD 1XWDD 3QTKC 1HRPB 1QTYR 3B4VE 1VPFA
chains in the KnotProt database with same CATH topology
2FJHV 1BNDB 1TGJA 3FUBD 1FZVB 3HH2B 1NYSB 2P6AB 2VPFF 2GH0C 1E9JA 2GYRD 2QJBB 2ASKA 2XACB 3QTKA 2FJGW 1PDGB 2QCWB 2FJHW 2QR0C 2VPFB 3KFDD 2QR0O 1VPFC 1MJVB 2GNNA 1REUA 1LXIA 2GOOD 3MJGB 2QR0P 1FL7D 1QFWA 2QR0J 2QJ9A 2R53B 2QJAB 1NYUB 1NT3A 1KLCB 1VPPW 1B8MA 2TGIA 2VPFD 3B4VF 2X1WA 1DZ7A 1RV6V 1S4YB 1XWDA 2GYZA 1ZKZA 3EO1I 3B4VB 3KFDB 2ARPA 2B0UB 1KLAB 1LX5A 2H62A 1WQ8A 2GNNC 1NYUD 1FL7B 2X1XE 2ARVB 2GYRA 1S4YD 1FLTV 1KATV 1HRPA 2BHKA 2H64A 1QTYV 1CZ8V 2QR0U 2X1WC 1BNDA 3EO1L 1AGQB 3QTKE 1HCNB 1FZVA 1REWB 3HH2A 2GOOA 1B98A 2P6AA 3BMPA 3EVSB 2QJBA 2PJYA 1KATW 2XACA 1BTGB 1QTYW 1CZ8W 2QCWA 1PDGA 2GYRC 2VPFA 2QCQB 2VWEB 1AGQD 2R52B 2C7WB 1MJVA 3MJGA 1WQ9B 3KFDC 3QTKD 2VPFG 1AOCB 1SGFB 1XWDE 2R53A 2QR0I 1KTZA 2QJAA 3BK3B 1FL7C 1KLCA 1RV6W 1VPFB 1M4UL 1TGKA 1WAQA 1PDGC 1HD4A 2VPFC 2GH0D 2V5EB 3B4VA 3QTKF 3KFDA 2B0UA 1SGFY 1KLAA 1TFGA 2QR0D 1ES7C 2ASKB 1FL7A 3QTKB 1TZHV 1FLTW 1VPFD 2ARVA 3BDYV 1TZIV 1QTYS 2FJGV 2GNNB 1BJ1V 1AGQA 2XV7A 1QFWB 1HCNA 3EO1C 1REWA 2QJ9B 1ES7A 1TZHW 2QR0V 2VPFE 1VPPV 2X1WB 1XWDB 1BJ1W 2GNND 2QCQA 2VWEA 2R52A 1BMPA 2C7WA 2VPFH 2GYRF 2H62B 1WQ9A 3FUBB 1AGQC 2GYRE 1AOCA 3BK3A 2GYRB 2X1WD 1XWDD 3QTKC 1HRPB 1QTYR 3B4VE 1VPFA
chains in the KnotProt database with same CATH homology


 
#chains in the KnotProt database with same CATH superfamily
 2FJH V;  1BND B;  1TGJ A;  3FUB D;  1FZV B;  3HH2 B;  1NYS B;  2P6A B;  2VPF F;  2GH0 C;  1E9J A;  2GYR D;  2QJB B;  2ASK A;  2XAC B;  3QTK A;  2FJG W;  1PDG B;  2QCW B;  2FJH W;  2QR0 C;  2VPF B;  3KFD D;  2QR0 O;  1VPF C;  1MJV B;  2GNN A;  1REU A;  1LXI A;  2GOO D;  3MJG B;  2QR0 P;  1FL7 D;  1QFW A;  2QR0 J;  2QJ9 A;  2R53 B;  2QJA B;  1NYU B;  1NT3 A;  1KLC B;  1VPP W;  1B8M A;  2TGI A;  2VPF D;  3B4V F;  2X1W A;  1DZ7 A;  1RV6 V;  1S4Y B;  1XWD A;  2GYZ A;  1ZKZ A;  3EO1 I;  3B4V B;  3KFD B;  2ARP A;  2B0U B;  1KLA B;  1LX5 A;  2H62 A;  1WQ8 A;  2GNN C;  1NYU D;  1FL7 B;  2X1X E;  2ARV B;  2GYR A;  1S4Y D;  1FLT V;  1KAT V;  1HRP A;  2BHK A;  2H64 A;  1QTY V;  1CZ8 V;  2QR0 U;  2X1W C;  1BND A;  3EO1 L;  1AGQ B;  3QTK E;  1HCN B;  1FZV A;  1REW B;  3HH2 A;  2GOO A;  1B98 A;  2P6A A;  3BMP A;  3EVS B;  2QJB A;  2PJY A;  1KAT W;  2XAC A;  1BTG B;  1QTY W;  1CZ8 W;  2QCW A;  1PDG A;  2GYR C;  2VPF A;  2QCQ B;  2VWE B;  1AGQ D;  2R52 B;  2C7W B;  1MJV A;  3MJG A;  1WQ9 B;  3KFD C;  3QTK D;  2VPF G;  1AOC B;  1SGF B;  1XWD E;  2R53 A;  2QR0 I;  1KTZ A;  2QJA A;  3BK3 B;  1FL7 C;  1KLC A;  1RV6 W;  1VPF B;  1M4U L;  1TGK A;  1WAQ A;  1PDG C;  1HD4 A;  2VPF C;  2GH0 D;  2V5E B;  3B4V A;  3QTK F;  3KFD A;  2B0U A;  1SGF Y;  1KLA A;  1TFG A;  2QR0 D;  1ES7 C;  2ASK B;  1FL7 A;  3QTK B;  1TZH V;  1FLT W;  1VPF D;  2ARV A;  3BDY V;  1TZI V;  1QTY S;  2FJG V;  2GNN B;  1BJ1 V;  1AGQ A;  2XV7 A;  1QFW B;  1HCN A;  3EO1 C;  1REW A;  2QJ9 B;  1ES7 A;  1TZH W;  2QR0 V;  2VPF E;  1VPP V;  2X1W B;  1XWD B;  1BJ1 W;  2GNN D;  2QCQ A;  2VWE A;  2R52 A;  1BMP A;  2C7W A;  2VPF H;  2GYR F;  2H62 B;  1WQ9 A;  3FUB B;  1AGQ C;  2GYR E;  1AOC A;  3BK3 A;  2GYR B;  2X1W D;  1XWD D;  3QTK C;  1HRP B;  1QTY R;  3B4V E;  1VPF A; 
#chains in the KnotProt database with same CATH topology
 2FJH V;  1BND B;  1TGJ A;  3FUB D;  1FZV B;  3HH2 B;  1NYS B;  2P6A B;  2VPF F;  2GH0 C;  1E9J A;  2GYR D;  2QJB B;  2ASK A;  2XAC B;  3QTK A;  2FJG W;  1PDG B;  2QCW B;  2FJH W;  2QR0 C;  2VPF B;  3KFD D;  2QR0 O;  1VPF C;  1MJV B;  2GNN A;  1REU A;  1LXI A;  2GOO D;  3MJG B;  2QR0 P;  1FL7 D;  1QFW A;  2QR0 J;  2QJ9 A;  2R53 B;  2QJA B;  1NYU B;  1NT3 A;  1KLC B;  1VPP W;  1B8M A;  2TGI A;  2VPF D;  3B4V F;  2X1W A;  1DZ7 A;  1RV6 V;  1S4Y B;  1XWD A;  2GYZ A;  1ZKZ A;  3EO1 I;  3B4V B;  3KFD B;  2ARP A;  2B0U B;  1KLA B;  1LX5 A;  2H62 A;  1WQ8 A;  2GNN C;  1NYU D;  1FL7 B;  2X1X E;  2ARV B;  2GYR A;  1S4Y D;  1FLT V;  1KAT V;  1HRP A;  2BHK A;  2H64 A;  1QTY V;  1CZ8 V;  2QR0 U;  2X1W C;  1BND A;  3EO1 L;  1AGQ B;  3QTK E;  1HCN B;  1FZV A;  1REW B;  3HH2 A;  2GOO A;  1B98 A;  2P6A A;  3BMP A;  3EVS B;  2QJB A;  2PJY A;  1KAT W;  2XAC A;  1BTG B;  1QTY W;  1CZ8 W;  2QCW A;  1PDG A;  2GYR C;  2VPF A;  2QCQ B;  2VWE B;  1AGQ D;  2R52 B;  2C7W B;  1MJV A;  3MJG A;  1WQ9 B;  3KFD C;  3QTK D;  2VPF G;  1AOC B;  1SGF B;  1XWD E;  2R53 A;  2QR0 I;  1KTZ A;  2QJA A;  3BK3 B;  1FL7 C;  1KLC A;  1RV6 W;  1VPF B;  1M4U L;  1TGK A;  1WAQ A;  1PDG C;  1HD4 A;  2VPF C;  2GH0 D;  2V5E B;  3B4V A;  3QTK F;  3KFD A;  2B0U A;  1SGF Y;  1KLA A;  1TFG A;  2QR0 D;  1ES7 C;  2ASK B;  1FL7 A;  3QTK B;  1TZH V;  1FLT W;  1VPF D;  2ARV A;  3BDY V;  1TZI V;  1QTY S;  2FJG V;  2GNN B;  1BJ1 V;  1AGQ A;  2XV7 A;  1QFW B;  1HCN A;  3EO1 C;  1REW A;  2QJ9 B;  1ES7 A;  1TZH W;  2QR0 V;  2VPF E;  1VPP V;  2X1W B;  1XWD B;  1BJ1 W;  2GNN D;  2QCQ A;  2VWE A;  2R52 A;  1BMP A;  2C7W A;  2VPF H;  2GYR F;  2H62 B;  1WQ9 A;  3FUB B;  1AGQ C;  2GYR E;  1AOC A;  3BK3 A;  2GYR B;  2X1W D;  1XWD D;  3QTK C;  1HRP B;  1QTY R;  3B4V E;  1VPF A; 
#chains in the KnotProt database with same CATH homology
 2FJH V;  1BND B;  1TGJ A;  3FUB D;  1FZV B;  3HH2 B;  1NYS B;  2P6A B;  2VPF F;  2GH0 C;  1E9J A;  2GYR D;  2QJB B;  2ASK A;  2XAC B;  3QTK A;  2FJG W;  1PDG B;  2QCW B;  2FJH W;  2QR0 C;  2VPF B;  3KFD D;  2QR0 O;  1VPF C;  1MJV B;  2GNN A;  1REU A;  1LXI A;  2GOO D;  3MJG B;  2QR0 P;  1FL7 D;  1QFW A;  2QR0 J;  2QJ9 A;  2R53 B;  2QJA B;  1NYU B;  1NT3 A;  1KLC B;  1VPP W;  1B8M A;  2TGI A;  2VPF D;  3B4V F;  2X1W A;  1DZ7 A;  1RV6 V;  1S4Y B;  1XWD A;  2GYZ A;  1ZKZ A;  3EO1 I;  3B4V B;  3KFD B;  2ARP A;  2B0U B;  1KLA B;  1LX5 A;  2H62 A;  1WQ8 A;  2GNN C;  1NYU D;  1FL7 B;  2X1X E;  2ARV B;  2GYR A;  1S4Y D;  1FLT V;  1KAT V;  1HRP A;  2BHK A;  2H64 A;  1QTY V;  1CZ8 V;  2QR0 U;  2X1W C;  1BND A;  3EO1 L;  1AGQ B;  3QTK E;  1HCN B;  1FZV A;  1REW B;  3HH2 A;  2GOO A;  1B98 A;  2P6A A;  3BMP A;  3EVS B;  2QJB A;  2PJY A;  1KAT W;  2XAC A;  1BTG B;  1QTY W;  1CZ8 W;  2QCW A;  1PDG A;  2GYR C;  2VPF A;  2QCQ B;  2VWE B;  1AGQ D;  2R52 B;  2C7W B;  1MJV A;  3MJG A;  1WQ9 B;  3KFD C;  3QTK D;  2VPF G;  1AOC B;  1SGF B;  1XWD E;  2R53 A;  2QR0 I;  1KTZ A;  2QJA A;  3BK3 B;  1FL7 C;  1KLC A;  1RV6 W;  1VPF B;  1M4U L;  1TGK A;  1WAQ A;  1PDG C;  1HD4 A;  2VPF C;  2GH0 D;  2V5E B;  3B4V A;  3QTK F;  3KFD A;  2B0U A;  1SGF Y;  1KLA A;  1TFG A;  2QR0 D;  1ES7 C;  2ASK B;  1FL7 A;  3QTK B;  1TZH V;  1FLT W;  1VPF D;  2ARV A;  3BDY V;  1TZI V;  1QTY S;  2FJG V;  2GNN B;  1BJ1 V;  1AGQ A;  2XV7 A;  1QFW B;  1HCN A;  3EO1 C;  1REW A;  2QJ9 B;  1ES7 A;  1TZH W;  2QR0 V;  2VPF E;  1VPP V;  2X1W B;  1XWD B;  1BJ1 W;  2GNN D;  2QCQ A;  2VWE A;  2R52 A;  1BMP A;  2C7W A;  2VPF H;  2GYR F;  2H62 B;  1WQ9 A;  3FUB B;  1AGQ C;  2GYR E;  1AOC A;  3BK3 A;  2GYR B;  2X1W D;  1XWD D;  3QTK C;  1HRP B;  1QTY R;  3B4V E;  1VPF A; 
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similar chains in the KnotProt database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the KnotProt database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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