2ROO | KnotProt

Cysteine knot

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Help Cysteine knot data interpretation Full screen

				Loop	Piercing
view details				1-c-8-b-20-c-15	14-b-31

Chain Sequence

CGSKRAWCKEKKDCCCGYNCVYAWYNQQSSCERKWKYLFTGEC

sequence length	43
structure length	43
publication title	Chemical synthesis and solution structure of a spider toxin that affects the inactivation of mammalian sodium channels rcsb
molecule tags	Toxin
molecule keywords	Neurotoxin magi-4
ec nomenclature
pdb deposition date	2008-04-04

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
4.10.40.10	Few Secondary Structures	Irregular	Omega-AgatoxinV	Omega-AgatoxinV	2rooA00

1VTXA 1G9PA 1OMBA 2ROOA 1IVAA 1OAVA 1AGGA 1OAWA 1OMAA 1QDPA
chains in the KnotProt database with same CATH superfamily

1VTXA 1G9PA 1OMBA 2ROOA 1IVAA 2DCVA 1CIXA 1OAVA 2DCWA 1AGGA 1OAWA 1OMAA 1QDPA
chains in the KnotProt database with same CATH topology

1VTXA 1G9PA 1OMBA 2ROOA 1IVAA 2DCVA 1CIXA 1OAVA 2DCWA 1AGGA 1OAWA 1OMAA 1QDPA
chains in the KnotProt database with same CATH homology

#chains in the KnotProt database with same CATH superfamily
 1VTX A;  1G9P A;  1OMB A;  2ROO A;  1IVA A;  1OAV A;  1AGG A;  1OAW A;  1OMA A;  1QDP A; 
#chains in the KnotProt database with same CATH topology
 1VTX A;  1G9P A;  1OMB A;  2ROO A;  1IVA A;  2DCV A;  1CIX A;  1OAV A;  2DCW A;  1AGG A;  1OAW A;  1OMA A;  1QDP A; 
#chains in the KnotProt database with same CATH homology
 1VTX A;  1G9P A;  1OMB A;  2ROO A;  1IVA A;  2DCV A;  1CIX A;  1OAV A;  2DCW A;  1AGG A;  1OAW A;  1OMA A;  1QDP A;

1QDPA 1VTXA
similar chains in the KnotProt database (40% sequence similarity)

None
similar chains in the pdb database (40% sequence similarity)

#similar chains in the KnotProt database (40% sequence similarity)
1QDP A; 1VTX A; 
#similar chains, but unknotted

#similar chains in the pdb database (40% sequence similarity)