| Knot core range | Knot core length | Knot tails range | Slipknot tails range | Slipknot loops range | N-end length | C-end length | Type | |||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| view details |
 |
+31 | 29-240 | 212 | 1-28 | 246-482 | 241-245 | 28 | 237 | slipknot |
Chain Sequence |
DPAALMQIGVIPTNVRQLMYYTEASSAFIVVKLMPTIDSPISGCNITSISSYNATVTKLLQPIGENLETIRNQLIPTRRRFAGVVIGLAALGVATAAQVTAAVALVKANENAAAILNLKNAIQKTNAAVADVVQATQSLGTAVQAVQDHINSVVSPAITAANCKAQDAIIGSILNLYLTELTTIFHNQITNPALSPITIQALRILLGSTLPTVVEKSFNTQISAAELLSSGLLTGQIVGLDLTYMQMVIKIELPTLTVQPATQIIDLATISAFINNQEVMAQLPTRVMVTGSLIQAYPASQCTITPNTVYCRYNDAQVLSDDTMACLQGNLTRCTFSPVVGSFLTRFVLFDGIVYANCRSMLCKCMQPAAVILQPSSSPVTVIDMYKCVSLQLDNLRFTITQLANV----TIKLESSQILSIDPLDISQNLAAVNKSLSDALQHLAQSDTYLSAIEDKIEEILSKIYHIENEIARIKKLIGE
|
Knotoid cutoff: 0.5
Knotoid matrix content: 1
| Knot core range | Knot core length | Knot tails range | Slipknot tails range | Slipknot loops range | N-end length | C-end length | Type | |||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| view details |
 |
2.1 | 30-235 | 206 | 1-29 | 249-478 | 236-248 | 29 | 230 | slipknot |
| sequence length |
482
|
| structure length |
478
|
| publication title |
Structure of the parainfluenza virus 5 F protein in its metastable, prefusion conformation
pubmed doi rcsb |
| molecule tags |
Viral protein
|
| molecule keywords |
Fusion glycoprotein F0
|
| source organism |
Simian virus 5
|
| missing residues |
407-410
|
| total genus |
 Genus: 127
|
| ec nomenclature | |
| pdb deposition date | 2005-10-11 |
| KnotProt deposition date | 2014-08-31 |
| chain | Pfam Accession Code | Pfam Family Identifier | Pfam Description |
|---|---|---|---|
| A | PF00523 | Fusion_gly | Fusion glycoprotein F0 |
Image from the rcsb pdb (www.rcsb.org)
cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Mainly Alpha | Up-down Bundle | Single alpha-helices involved in coiled-coils or other helix-helix interfaces | Head and neck region of the ectodomain of NDV fusion glycoprotein | ||
| Mainly Beta | Beta Barrel | Head and neck region of the ectodomain of NDV fusion glycoprotein | Newcastle disease virus like domain | ||
| Mainly Beta | Sandwich | Immunoglobulin-like | Head and neck region of the ectodomain of NDV fusion glycoprotein |
#chains in the KnotProt database with same CATH superfamily 2B9B A; #chains in the KnotProt database with same CATH topology 2V33 B; 2B9B A; 1ASO A; #chains in the KnotProt database with same CATH homology 2B9B A;
#similar chains in the KnotProt database (?% sequence similarity) ...loading similar chains, please wait... #similar chains, but unknotted ...loading similar chains, please wait... #similar chains in the pdb database (?% sequence similarity) ...loading similar chains, please wait...
