2B9BA

Structure of the parainfluenza virus 5 f protein in its metastable, pre-fusion conformation
Slipknot S +31
Knot core range Knot core length Knot tails range Slipknot tails range Slipknot loops range N-end length C-end length Type
view details
+31 29-240 212 1-28 246-482 241-245 28 237 slipknot
Chain Sequence
DPAALMQIGVIPTNVRQLMYYTEASSAFIVVKLMPTIDSPISGCNITSISSYNATVTKLLQPIGENLETIRNQLIPTRRRFAGVVIGLAALGVATAAQVTAAVALVKANENAAAILNLKNAIQKTNAAVADVVQATQSLGTAVQAVQDHINSVVSPAITAANCKAQDAIIGSILNLYLTELTTIFHNQITNPALSPITIQALRILLGSTLPTVVEKSFNTQISAAELLSSGLLTGQIVGLDLTYMQMVIKIELPTLTVQPATQIIDLATISAFINNQEVMAQLPTRVMVTGSLIQAYPASQCTITPNTVYCRYNDAQVLSDDTMACLQGNLTRCTFSPVVGSFLTRFVLFDGIVYANCRSMLCKCMQPAAVILQPSSSPVTVIDMYKCVSLQLDNLRFTITQLANV----TIKLESSQILSIDPLDISQNLAAVNKSLSDALQHLAQSDTYLSAIEDKIEEILSKIYHIENEIARIKKLIGE
Whole chain analysis
Subchain analysis 

Knotoid cutoff: 0.5


Knotoid matrix content: 1

Knot core range Knot core length Knot tails range Slipknot tails range Slipknot loops range N-end length C-end length Type
view details
2.1 30-235 206 1-29 249-478 236-248 29 230 slipknot
missing residues 407-410
publication title Structure of the parainfluenza virus 5 F protein in its metastable, prefusion conformation
pubmed doi rcsb
structure length 478
molecule tags Viral protein
source organism Simian virus 5
sequence length 482
total genus Genus: 127
molecule keywords Fusion glycoprotein F0
ec nomenclature
pdb deposition date 2005-10-11
KnotProt deposition date 2014-08-31

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00523 Fusion_gly Fusion glycoprotein F0
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.20.5.1070 Mainly Alpha Up-down Bundle Single alpha-helices involved in coiled-coils or other helix-helix interfaces Head and neck region of the ectodomain of NDV fusion glycoprotein 2b9bA04
2.40.490.10 Mainly Beta Beta Barrel Head and neck region of the ectodomain of NDV fusion glycoprotein Newcastle disease virus like domain 2b9bA01
2.60.40.1690 Mainly Beta Sandwich Immunoglobulin-like Head and neck region of the ectodomain of NDV fusion glycoprotein 2b9bA03
2B9BA
chains in the KnotProt database with same CATH superfamily
2V33B 2B9BA 1ASOA
chains in the KnotProt database with same CATH topology
2B9BA
chains in the KnotProt database with same CATH homology


 
#chains in the KnotProt database with same CATH superfamily
 2B9B A; 
#chains in the KnotProt database with same CATH topology
 2V33 B;  2B9B A;  1ASO A; 
#chains in the KnotProt database with same CATH homology
 2B9B A; 
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similar chains in the KnotProt database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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#similar chains, but unknotted
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