| Knot core range | Knot core length | Knot tails range | Slipknot tails range | Slipknot loops range | N-end length | C-end length | Type | |||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| view details |
 |
+31 | 161-205 | 45 | 1-160, 206-229 | 160 | 24 | knot |
Chain Sequence |
MHVFYSEERRGNLLILREGEVKHFRVRRIEKDEEFGVIHEGKIYVCKVRREDKREISCEIVEELETKLPPKDITLYQSVTVDLKTMDTIVRQATELGVLTFVPIISERSFQKEEAILKKTEKWKRIVIEAMKQSRRPIPMEIKKPVRLSDLIPESEENIILDNFYEGVKPKDVNLEAKTYSVVVGPEGGFSKRESQILREKGFKSVLLEPYTLRTETAVVSIVSILMNF
|
Knotoid cutoff: 0.5
Knotoid matrix content: 1
| Knot core range | Knot core length | Knot tails range | Slipknot tails range | Slipknot loops range | N-end length | C-end length | Type | |||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| view details |
 |
3.1 | 158-206 | 49 | 1-157, 207-229 | 157 | 23 | knot | ||||
| view details |
 |
2.1 | 156-203 | 48 | 1-155 | 209-229 | 204-208 | 155 | 21 | slipknot | ||
| view details |
|
3.1 | 159-208 | 50 | 209-229 | 1-157 | 158-158 | 157 | 20 | slipknot | ||
| view details |
|
3.1 | 162-221 | 60 | 1-158, 228-229 | 159-161, 222-227 | 158 | 2 | slipknot |
| sequence length |
229
|
| structure length |
229
|
| publication title |
Crystal structure of rRNA methyltransferase with SAM ligand
rcsb |
| molecule tags |
Rna methyltransferase
|
| molecule keywords |
UPF0088 protein aq_165
|
| source organism |
Aquifex aeolicus
|
| total genus |
 Genus: 72
|
| ec nomenclature |
ec
2.1.1.193: 16S rRNA (uracil(1498)-N(3))-methyltransferase. |
| pdb deposition date | 2007-03-02 |
| KnotProt deposition date | 2014-07-31 |
| chain | Pfam Accession Code | Pfam Family Identifier | Pfam Description |
|---|---|---|---|
| A | PF04452 | Methyltrans_RNA | RNA methyltransferase |
Image from the rcsb pdb (www.rcsb.org)
#similar chains in the KnotProt database (?% sequence similarity) ...loading similar chains, please wait... #similar chains, but unknotted ...loading similar chains, please wait... #similar chains in the pdb database (?% sequence similarity) ...loading similar chains, please wait...
