2EGWA

Crystal structure of rrna methyltransferase with sah ligand
Knot K +31
Knot core range Knot core length Knot tails range Slipknot tails range Slipknot loops range N-end length C-end length Type
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+31 160-205 46 1-159, 206-229 159 24 knot
Chain Sequence
MHVFYSEERRGNLLILREGEVKHFRVRRIEKDEEFGVIHEGKIYVCKVRREDKREISCEIVEELETKLPPKDITLYQSVTVDLKTMDTIVRQATELGVLTFVPIISERSFQKEEAILKKTEKWKRIVIEAMKQSRRPIPMEIKKPVRLSDLIPESEENIILDNFYEGVKPKDVNLEAKTYSVVVGPEGGFSKRESQILREKGFKSVLLEPYTLRTETAVVSIVSILMNF
Whole chain analysis
Subchain analysis 

Knotoid cutoff: 0.5


Knotoid matrix content: 1

Knot core range Knot core length Knot tails range Slipknot tails range Slipknot loops range N-end length C-end length Type
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3.1 157-208 52 1-156, 209-229 156 21 knot
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2.1 157-203 47 1-156 209-229 204-208 156 21 slipknot
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3.1 158-207 50 208-229 1-156 157-157 156 21 slipknot
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3.1 159-208 50 1-157, 223-229 158-158, 209-222 157 7 slipknot
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3.1 159-222 64 223-229 1-157 158-158 157 6 slipknot
publication title Crystal structure of rRNA methyltransferase with SAH ligand
rcsb
structure length 229
molecule tags Rna methyltransferase
source organism Aquifex aeolicus
sequence length 229
total genus Genus: 71
molecule keywords UPF0088 protein aq_165
ec nomenclature ec 2.1.1.193: 16S rRNA (uracil(1498)-N(3))-methyltransferase.
pdb deposition date 2007-03-02
KnotProt deposition date 2014-07-31

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF04452 Methyltrans_RNA RNA methyltransferase
Image from the rcsb pdb (www.rcsb.org)
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similar chains in the pdb database (?% sequence similarity)

 
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