2GSUA

Structure of xac nucleotide pyrophosphatase/phosphodiesterase in complex with amp
Slipknot S +31
Knot core range Knot core length Knot tails range Slipknot tails range Slipknot loops range N-end length C-end length Type
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+31 10-214 205 1-9 332-382 215-331 9 51 slipknot
Chain Sequence
TPHALLLISIDGLRADMLDRGITPNLSHLAREGVRARWMAPSYPSLTFPNHYTLVTGLRPDHHGIVHNSMRDPTLGGFWLSKSEAVGDARWWGGEPVWVGVENTGQHAATWSWPGSEAAIKGVRPSQWRHYQKGVRLDTRVDAVRGWLATDGAQRNRLVTLYFEHVDEAGHDHGPESRQYADAVRAVDAAIGRLLAGMQRDGTRARTNIIVVSDHGMAEVAPGHAISVEDIAPPQIATAITDGQVIGFEPLPGQQAAAEASVLGAHDHYDCWRKAELPARWQYGSHPRIPSLVCQMHEGWDALFPDKLAKRAQRGTRGSHGYDPALPSMRAVFLAQGPDLAQGKTLPGFDNVDVYALMSRLLGIPAAPNDGNPATLLPALRM
Whole chain analysis
Subchain analysis 

Knotoid cutoff: 0.5


Knotoid matrix content: 1

Knot core range Knot core length Knot tails range Slipknot tails range Slipknot loops range N-end length C-end length Type
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3.1 9-216 208 1-8 324-382 217-323 8 59 slipknot
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3.1 9-323 315 1-8 327-382 324-326 8 56 slipknot
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2.1 11-280 270 1-8, 287-382 9-10, 281-286 8 96 slipknot
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4.3m 11-286 276 1-8, 290-382 9-10, 287-289 8 93 slipknot
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2.1 12-230 219 1-8, 241-382 9-11, 231-240 8 142 slipknot
publication title Structural and functional comparisons of nucleotide pyrophosphatase/phosphodiesterase and alkaline phosphatase: implications for mechanism and evolution
pubmed doi rcsb
structure length 382
molecule tags Hydrolase
source organism Xanthomonas axonopodis pv. citri str. 306
sequence length 382
total genus Genus: 133
molecule keywords phosphodiesterase-nucleotide pyrophosphatase
ec nomenclature ec 3.6.1.9: Nucleotide diphosphatase.
pdb deposition date 2006-04-26
KnotProt deposition date 2014-07-31

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01663 Phosphodiest Type I phosphodiesterase / nucleotide pyrophosphatase
Image from the rcsb pdb (www.rcsb.org)
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similar chains in the KnotProt database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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