2J85A

B116 of sulfolobus turreted icosahedral virus (stiv)
Slipknot S +31
Knot core range Knot core length Knot tails range Slipknot tails range Slipknot loops range N-end length C-end length Type
view details
+31 4-82 79 1-3 113-117 83-112 3 5 slipknot
Chain Sequence
GKVFLTNAFSINMLKEFPTTITIDKLDEEDFCLKLELRLEDGTLINAIGHDSTINLVNTLCGTQLQKNRVEVKMNEGDEALIIMISQRLEEGKVLSDKEIKDMYRQGKISFYEVWHH
Whole chain analysis
Subchain analysis 

Knotoid cutoff: 0.5


Knotoid matrix content: 1

Knot core range Knot core length Knot tails range Slipknot tails range Slipknot loops range N-end length C-end length Type
view details
3.1 4-86 83 1-3 91-117 87-90 3 27 slipknot
view details
3.1 4-90 87 1-3 111-117 91-110 3 7 slipknot
sequence length 117
structure length 117
publication title A New DNA Binding Protein Highly Conserved in Diverse Crenarchaeal Viruses
pubmed doi rcsb
molecule tags Viral protein
molecule keywords STIV B116
source organism Sulfolobus turreted icosahedral virus
total genus Genus: 24
ec nomenclature
pdb deposition date 2006-10-19
KnotProt deposition date 2014-07-31

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF08960 DUF1874 Domain of unknown function (DUF1874)
Image from the rcsb pdb (www.rcsb.org)
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