2JLNA

Structure of mhp1, a nucleobase-cation-symport-1 family transporter
Slipknot S +31 41 +31
Knot core range Knot core length Knot tails range Slipknot tails range Slipknot loops range N-end length C-end length Type
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+31 52-223 172 224-463 1-34 35-51 34 239 slipknot
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41 30-263 234 1-29 308-463 264-307 29 156 slipknot
Chain Sequence
EARSLLNPSNAPTRYAERSVGPFSLAAIWFAMAIQVAIFIAAGQMTSSFQVWQVIVAIAAGCTIAVILLFFTQSAAIRWGINFTVAARMPFGIRGSLIPITLKALLSLFWFGFQTWLGALALDEITRLLTGFTNLPLWIVIFGAIQVVTTFYGITFIRWMNVFASPVLLAMGVYMVYLMLDGADVSLGEVMSMGGENPGMPFSTAIMIFVGGWIAVVVSIHDIVKECKVDPNASREGQTKADARYATAQWLGMVPASIIFGFIGAASMVLVGEWNPVIAITEVVGGVSIPMAILFQVFVLLATWSTNPAANLLSPAYTLCSTFPRVFTFKTGVIVSAVVGLLMMPWQFAGVLNTFLNLLASALGPLAGIMISDYFLVRRRRISLHDLYRTKGIYTYWRGVNWVALAVYAVALAVSFLTPDLMFVTGLIAALLLHIPAMRWVAKTFPLFSEAESRNEDYLRPIG
Whole chain analysis
Subchain analysis 

Knotoid cutoff: 0.5


Knotoid matrix content: 1

Knot core range Knot core length Knot tails range Slipknot tails range Slipknot loops range N-end length C-end length Type
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3.2 24-257 234 1-23 273-463 258-272 23 191 slipknot
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3.2 23-272 250 1-22 294-463 273-293 22 170 slipknot
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4.1 32-283 252 1-5, 302-463 6-31, 284-301 5 162 slipknot
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3.2 32-301 270 1-5, 307-463 6-31, 302-306 5 157 slipknot
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3.2 33-280 248 1-22, 300-463 23-32, 281-299 22 164 slipknot
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4.1 33-299 267 1-31, 302-463 32-32, 300-301 31 162 slipknot
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3.2 32-274 243 1-22, 280-463 23-31, 275-279 22 184 slipknot
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3.2 32-279 248 1-22, 281-463 23-31, 280-280 22 183 slipknot
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2.3 35-258 224 1-23, 270-463 24-34, 259-269 23 194 slipknot
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2.1 56-222 167 1-29, 248-463 30-55, 223-247 29 216 slipknot
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2.1 59-310 252 311-463 1-29 30-58 29 152 slipknot
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1.1 49-217 169 1-35, 223-463 36-48, 218-222 35 241 slipknot
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1.1 59-251 193 1-40, 266-463 41-58, 252-265 40 198 slipknot
publication title Structure and Molecular Mechanism of a Nucleobase-Cation-Symport-1 Family Transporter.
pubmed doi rcsb
structure length 463
molecule tags Membrane protein
source organism Microbacterium liquefaciens
sequence length 463
total genus Genus: 182
molecule keywords MHP1
ec nomenclature
pdb deposition date 2008-09-11
KnotProt deposition date 2014-07-31

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF02133 Transp_cyt_pur Permease for cytosine/purines, uracil, thiamine, allantoin
Image from the rcsb pdb (www.rcsb.org)
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similar chains in the KnotProt database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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