2RDO7

50s subunit with ef-g(gdpnp) and rrf bound
Warning
  • Chain breaks within knot 41 (displayed as a gray area on the plot and as '-' on the sequence). The broken part of the chain has been replaced by a straight segment, which may affect what knot types are detected - be careful with interpreting results.
Knot K 41

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Knot core range Knot core length Knot tails range Slipknot tails range Slipknot loops range N-end length C-end length Type
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41 44-384 341 1-43, 385-704 43 320 knot
Chain Sequence
MARTTPIARYRNIGISAHIDAGKTTTTERILFYTGVNHKIGEV--------------------TSAATTAFWSGMAKQYEPHRINIIDTPGHVDFTIEVERSMRVLDGAVMVYCAVGGVQPQSETVWRQANKYKVPRIAFVNKMDRMGANFLKVVNQIKTRLGANPVPLQLAIGAEEHFTGVVDLVKMKAINWNDADQGVTFEYEDIPADMVELANEWHQNLIESAAEASEELMEKYLGGEELTEAEIKGALRQRVLNNEIILVTCGSAFKNKGVQAMLDAVIDYLPSPVDVPAINGILDDGKDTPAERHASDDEPFSALAFKIATDPFVGNLTFFRVYSGVVNSGDTVLNSVKAARERFGRIVQMHANKREEIKEVRAGDIAAAIGLKDVTTGDTLCDPDAPIILERMEFPEPVISIAVEPKTKADQEKMGLALGRLAKEDPSFRVWTDEESNQTIIAGMGELHLDIIVDRMKREFNVEANVGKPQVAYRETIRQKVTDVEGKHAKQSGGRGQYGHVVIDMYPLEPGSNPKGYEFINDIKGGVIPGEYIPAVDKGIQEQLKAGPLAGYPVVDMGIRLHFGSYHDVDSSELAFKLAASIAFKEGFKKAKPVLLEPIMKVEVETPEENTGDVIGDLSRRRGMLKGQESEVTGVKIHAEVPLSEMFGYATQLRSLTKGRASYTMEFLKYDEAPSNVAQAVIEARGK
Whole chain analysis

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Subchain analysis 

Knotoid cutoff: 0.5


Knotoid matrix content: 1


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Knot core range Knot core length Knot tails range Slipknot tails range Slipknot loops range N-end length C-end length Type
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3.2 8-368 361 1-7 376-684 369-375 7 309 slipknot
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3.2 6-377 372 1-5 385-684 378-384 5 300 slipknot
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3.2 12-358 347 1-3, 367-684 4-11, 359-366 3 318 slipknot
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3.2 12-366 355 1-3, 373-684 4-11, 367-372 3 312 slipknot
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4.1 12-372 361 1-4, 377-684 5-11, 373-376 4 308 slipknot
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4.1 44-444 401 1-12, 648-684 13-43, 445-647 12 37 slipknot
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4.1 25-389 365 1-14, 396-684 15-24, 390-395 14 289 slipknot
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5.5m 23-656 634 1-15, 677-684 16-22, 657-676 15 8 slipknot
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4.1 44-378 335 1-18, 420-684 19-43, 379-419 18 265 slipknot
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3.2 43-354 312 1-19, 366-684 20-42, 355-365 19 319 slipknot
How to cite
KnotProt | Interdisciplinary Laboratory of Biological Systems Modelling