2RH6A

Structure of xac npp for evaluation of refinement methodology
Slipknot S +31
Knot core range Knot core length Knot tails range Slipknot tails range Slipknot loops range N-end length C-end length Type
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+31 10-214 205 1-9 331-382 215-330 9 52 slipknot
Chain Sequence
TPHALLLISIDGLRADMLDRGITPNLSHLAREGVRARWMAPSYPSLTFPNHYTLVTGLRPDHHGIVHNSMRDPTLGGFWLSKSEAVGDARWWGGEPVWVGVENTGQHAATWSWPGSEAAIKGVRPSQWRHYQKGVRLDTRVDAVRGWLATDGAQRNRLVTLYFEHVDEAGHDHGPESRQYADAVRAVDAAIGRLLAGMQRDGTRARTNIIVVSDHGMAEVAPGHAISVEDIAPPQIATAITDGQVIGFEPLPGQQAAAEASVLGAHDHYDCWRKAELPARWQYGSHPRIPSLVCQMHEGWDALFPDKLAKRAQRGTRGSHGYDPALPSMRAVFLAQGPDLAQGKTLPGFDNVDVYALMSRLLGIPAAPNDGNPATLLPALRM
Whole chain analysis
Subchain analysis 

Knotoid cutoff: 0.5


Knotoid matrix content: 1

Knot core range Knot core length Knot tails range Slipknot tails range Slipknot loops range N-end length C-end length Type
view details
3.1 9-216 208 1-8 289-382 217-288 8 94 slipknot
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3.1 5-320 316 1-4 329-382 321-328 4 54 slipknot
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2.1 10-270 261 1-8, 275-382 9-9, 271-274 8 108 slipknot
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2.1 12-248 237 1-8, 256-382 9-11, 249-255 8 127 slipknot
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2.1 10-258 249 1-8, 266-382 9-9, 259-265 8 117 slipknot
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2.1 11-273 263 1-8, 283-382 9-10, 274-282 8 100 slipknot
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2.1 11-290 280 1-6, 297-382 7-10, 291-296 6 86 slipknot
publication title Crystallographic Goodness of Fit: A New Treatment of Model Complexity
rcsb
structure length 382
molecule tags Hydrolase
source organism Xanthomonas axonopodis pv. citri
sequence length 382
total genus Genus: 133
molecule keywords Phosphodiesterase-nucleotide pyrophosphatase
ec nomenclature ec 3.6.1.9: Nucleotide diphosphatase.
pdb deposition date 2007-10-06
KnotProt deposition date 2014-07-31

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01663 Phosphodiest Type I phosphodiesterase / nucleotide pyrophosphatase
Image from the rcsb pdb (www.rcsb.org)
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similar chains in the KnotProt database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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