| Knot core range | Knot core length | Knot tails range | Slipknot tails range | Slipknot loops range | N-end length | C-end length | Type | |||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| view details |
 |
+31 | 157-202 | 46 | 1-156, 203-229 | 156 | 27 | knot |
Chain Sequence |
LVPQAPPVLTSKDKITKRMIVVLAMASLETHKI---------YVLLNCDDHQGLLKKMGRDISEARPDITHQCLLTLLDSPINKAGKLQVYIQTSRGILIEVNPTVRIPRTFKRFSGLMVQLLHKLSIRSEEKLLKVIK---NPITDHLPTKCRKVTLSFDAPVIRVQDYIEKLDDDESICVFVGAMARGKDNFADEYVDEKVGLSNYPLSASVACSKFCHGAEDAWNI
|
Knotoid cutoff: 0.5
Knotoid matrix content: 1
| Knot core range | Knot core length | Knot tails range | Slipknot tails range | Slipknot loops range | N-end length | C-end length | Type | |||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| view details |
 |
3.1 | 145-192 | 48 | 1-144, 193-217 | 144 | 25 | knot | ||||
| view details |
 |
2.1 | 140-188 | 49 | 1-10, 193-217 | 11-139, 189-192 | 10 | 25 | slipknot |
| sequence length |
229
|
| structure length |
217
|
| publication title |
The Yeast Ribosome Synthesis Factor Emg1 is a Novel Member of the Superfamily of Alpha/Beta Knot Fold Methyltransferases.
pubmed doi rcsb |
| molecule tags |
Ribosomal protein
|
| molecule keywords |
ESSENTIAL FOR MITOTIC GROWTH 1
|
| source organism |
Saccharomyces cerevisiae
|
| missing residues |
34-42, 131-133
|
| total genus |
 Genus: 60
|
| ec nomenclature |
ec
2.1.1.260: rRNA small subunit pseudouridine methyltransferase Nep1. |
| pdb deposition date | 2007-06-18 |
| KnotProt deposition date | 2014-07-31 |
| chain | Pfam Accession Code | Pfam Family Identifier | Pfam Description |
|---|---|---|---|
| A | PF03587 | EMG1 | EMG1/NEP1 methyltransferase |
Image from the rcsb pdb (www.rcsb.org)
#similar chains in the KnotProt database (?% sequence similarity) ...loading similar chains, please wait... #similar chains, but unknotted ...loading similar chains, please wait... #similar chains in the pdb database (?% sequence similarity) ...loading similar chains, please wait...
