2V3JA

The yeast ribosome synthesis factor emg1 alpha beta knot fold methyltransferase
Knot K +31
Knot core range Knot core length Knot tails range Slipknot tails range Slipknot loops range N-end length C-end length Type
view details
+31 157-202 46 1-156, 203-229 156 27 knot
Chain Sequence
LVPQAPPVLTSKDKITKRMIVVLAMASLETHKI---------YVLLNCDDHQGLLKKMGRDISEARPDITHQCLLTLLDSPINKAGKLQVYIQTSRGILIEVNPTVRIPRTFKRFSGLMVQLLHKLSIRSEEKLLKVIK---NPITDHLPTKCRKVTLSFDAPVIRVQDYIEKLDDDESICVFVGAMARGKDNFADEYVDEKVGLSNYPLSASVACSKFCHGAEDAWNI
Whole chain analysis
Subchain analysis 

Knotoid cutoff: 0.5


Knotoid matrix content: 1

Knot core range Knot core length Knot tails range Slipknot tails range Slipknot loops range N-end length C-end length Type
view details
3.1 145-192 48 1-144, 193-217 144 25 knot
view details
2.1 140-188 49 1-10, 193-217 11-139, 189-192 10 25 slipknot
missing residues 34-42, 131-133
publication title The Yeast Ribosome Synthesis Factor Emg1 is a Novel Member of the Superfamily of Alpha/Beta Knot Fold Methyltransferases.
pubmed doi rcsb
structure length 217
molecule tags Ribosomal protein
source organism Saccharomyces cerevisiae
sequence length 229
total genus Genus: 60
molecule keywords ESSENTIAL FOR MITOTIC GROWTH 1
ec nomenclature ec 2.1.1.260: rRNA small subunit pseudouridine methyltransferase Nep1.
pdb deposition date 2007-06-18
KnotProt deposition date 2014-07-31

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF03587 EMG1 EMG1/NEP1 methyltransferase
Image from the rcsb pdb (www.rcsb.org)
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similar chains in the KnotProt database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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