| Knot core range | Knot core length | Knot tails range | Slipknot tails range | Slipknot loops range | N-end length | C-end length | Type | |||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| view details |
 |
+31 | 155-200 | 46 | 1-154, 201-227 | 154 | 27 | knot |
Chain Sequence |
PQAPPVLTSKDKITKRMIVVLAMASLETHKI---------YVLLNCDDHQGLLKKMGRDISEARPDITHQCLLTLLDSPINKAGKLQVYIQTSRGILIEVNPTVRIPRTFKRFSGLMVQLLHKLSIRSVNSEEKLLKVIKNPITDHLPTKCRKVTLSFDAPVIRVQDYIEKLDDDESICVFVGAMARGKDNFADEYVDEKVGLSNYPLSASVACSKFCHGAEDAWNI
|
Knotoid cutoff: 0.5
Knotoid matrix content: 1
| Knot core range | Knot core length | Knot tails range | Slipknot tails range | Slipknot loops range | N-end length | C-end length | Type | |||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| view details |
 |
3.1 | 146-192 | 47 | 1-145, 193-218 | 145 | 26 | knot | ||||
| view details |
 |
2.1 | 100-190 | 91 | 1-65, 193-218 | 66-99, 191-192 | 65 | 26 | slipknot | |||
| view details |
|
2.1 | 135-189 | 55 | 1-96, 193-218 | 97-134, 190-192 | 96 | 26 | slipknot | |||
| view details |
|
2.1 | 142-189 | 48 | 1-135, 193-218 | 136-141, 190-192 | 135 | 26 | slipknot |
| sequence length |
227
|
| structure length |
218
|
| publication title |
The Yeast Ribosome Synthesis Factor Emg1 is a Novel Member of the Superfamily of Alpha/Beta Knot Fold Methyltransferases.
pubmed doi rcsb |
| molecule tags |
Ribosomal protein
|
| molecule keywords |
ESSENTIAL FOR MITOTIC GROWTH 1
|
| source organism |
Saccharomyces cerevisiae
|
| missing residues |
32-40
|
| total genus |
 Genus: 58
|
| ec nomenclature |
ec
2.1.1.260: rRNA small subunit pseudouridine methyltransferase Nep1. |
| pdb deposition date | 2007-06-18 |
| KnotProt deposition date | 2014-07-31 |
| chain | Pfam Accession Code | Pfam Family Identifier | Pfam Description |
|---|---|---|---|
| A | PF03587 | EMG1 | EMG1/NEP1 methyltransferase |
Image from the rcsb pdb (www.rcsb.org)
#similar chains in the KnotProt database (?% sequence similarity) ...loading similar chains, please wait... #similar chains, but unknotted ...loading similar chains, please wait... #similar chains in the pdb database (?% sequence similarity) ...loading similar chains, please wait...
