2V3KA

The yeast ribosome synthesis factor emg1 alpha beta knot fold methyltransferase
Knot K +31
Knot core range Knot core length Knot tails range Slipknot tails range Slipknot loops range N-end length C-end length Type
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+31 155-200 46 1-154, 201-227 154 27 knot
Chain Sequence
PQAPPVLTSKDKITKRMIVVLAMASLETHKI---------YVLLNCDDHQGLLKKMGRDISEARPDITHQCLLTLLDSPINKAGKLQVYIQTSRGILIEVNPTVRIPRTFKRFSGLMVQLLHKLSIRSVNSEEKLLKVIKNPITDHLPTKCRKVTLSFDAPVIRVQDYIEKLDDDESICVFVGAMARGKDNFADEYVDEKVGLSNYPLSASVACSKFCHGAEDAWNI
Whole chain analysis
Subchain analysis 

Knotoid cutoff: 0.5


Knotoid matrix content: 1

Knot core range Knot core length Knot tails range Slipknot tails range Slipknot loops range N-end length C-end length Type
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3.1 146-192 47 1-145, 193-218 145 26 knot
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2.1 100-190 91 1-65, 193-218 66-99, 191-192 65 26 slipknot
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2.1 135-189 55 1-96, 193-218 97-134, 190-192 96 26 slipknot
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2.1 142-189 48 1-135, 193-218 136-141, 190-192 135 26 slipknot
missing residues 32-40
publication title The Yeast Ribosome Synthesis Factor Emg1 is a Novel Member of the Superfamily of Alpha/Beta Knot Fold Methyltransferases.
pubmed doi rcsb
structure length 218
molecule tags Ribosomal protein
source organism Saccharomyces cerevisiae
sequence length 227
total genus Genus: 58
molecule keywords ESSENTIAL FOR MITOTIC GROWTH 1
ec nomenclature ec 2.1.1.260: rRNA small subunit pseudouridine methyltransferase Nep1.
pdb deposition date 2007-06-18
KnotProt deposition date 2014-07-31

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF03587 EMG1 EMG1/NEP1 methyltransferase
Image from the rcsb pdb (www.rcsb.org)
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similar chains in the KnotProt database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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