2X39A

Structure of 4-amino-n-(4-chlorobenzyl)-1-(7h-pyrrolo(2,3-d) pyrimidin-4-yl)piperidine-4-carboxamide bound to pkb
Warning
  • Chain breaks within knot 41 (displayed as a gray area on the plot and as '-' on the sequence). The broken part of the chain has been replaced by a straight segment, which may affect what knot types are detected - be careful with interpreting results.
Genus: 98
Knot K 41 41

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Knot core range Knot core length Knot tails range Slipknot tails range Slipknot loops range N-end length C-end length Type
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41 34-324 291 1-33, 325-337 33 13 knot
Chain Sequence
KVTMNDFDYLKLLGKGTFGKVILVREKATGRYYAMKILRKEVIIAKDEVAHTVTESRVLQNTRHPFLTALKYAFQTHDRLCFVMEYANGGELFFHLSRERVFTEERARFYGAEIVSALEYLHSRDVVYRDIKLENLMLDKDGHIKITDFGLCKEGISDGATMKTFCGTPEYLAPEVLEDNDYGRAVDWWGLGVVMYEMMCGRLPFYNQDHERLFELILMEEIRFPRTLSPEAKSLLAGLLKKDPKQRLGGGPSDAKEVMEHRFFLSINWQDVVQKKLLPPFKPQVTSEVDTRYFDDEFTAQSIT--------------------QEMFEDFDYIADW
Whole chain analysis

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Subchain analysis 

Knotoid cutoff: 0.5


Knotoid matrix content: 1


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Knot core range Knot core length Knot tails range Slipknot tails range Slipknot loops range N-end length C-end length Type
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3.2m 11-304 294 1-10, 305-317 10 13 knot
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3.2 16-304 289 1-10, 313-317 11-15, 305-312 10 5 slipknot
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4.1 33-304 272 305-317 1-23 24-32 23 12 slipknot
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3.2 38-305 268 306-317 1-32 33-37 32 11 slipknot
How to cite
KnotProt | Interdisciplinary Laboratory of Biological Systems Modelling