2X79A

Inward facing conformation of mhp1
Slipknot S +31 41 +31
Knot core range Knot core length Knot tails range Slipknot tails range Slipknot loops range N-end length C-end length Type
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+31 51-227 177 228-465 1-37 38-50 37 237 slipknot
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41 34-265 232 1-33 308-465 266-307 33 158 slipknot
Chain Sequence
IEEARSLLNPSNAPTRYAERSVGPFSLAAIWFAMAIQVAIFIAAGQMTSSFQVWQVIVAIAAGCTIAVILLFFTQSAAIRWGINFTVAARMPFGIRGSLIPITLKALLSLFWFGFQTWLGALALDEITRLLTGFTNLPLWIVIFGAIQVVTTFYGITFIRWMNVFASPVLLAMGVYMVYLMLDGADVSLGEVMSMGGENPGMPFSTAIMIFVGGWIAVVVSIHDIVKECKVDPNASREGQTKADARYATAQWLGMVPASIIFGFIGAASMVLVGEWNPVIAITEVVGGVSIPMAILFQVFVLLATWSTNPAANLLSPAYTLCSTFPRVFTFKTGVIVSAVVGLLMMPWQFAGVLNTFLNLLASALGPLAGIMISDYFLVRRRRISLHDLYRTKGIYTYWRGVNWVALAVYAVALAVSFLTPDLMFVTGLIAALLLHIPAMRWVAKTFPLFSEAESRNEDYLRPIG
Whole chain analysis
Subchain analysis 

Knotoid cutoff: 0.5


Knotoid matrix content: 1

Knot core range Knot core length Knot tails range Slipknot tails range Slipknot loops range N-end length C-end length Type
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3.2 28-261 234 1-27 284-465 262-283 27 182 slipknot
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4.1 24-283 260 1-23 301-465 284-300 23 165 slipknot
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4.1 24-300 277 1-23 303-465 301-302 23 163 slipknot
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4.1 27-291 265 1-26 306-465 292-305 26 160 slipknot
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4.1 26-305 280 1-25 307-465 306-306 25 159 slipknot
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3.2 27-306 280 1-26 310-465 307-309 26 156 slipknot
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3.2 26-309 284 1-25 312-465 310-311 25 154 slipknot
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3.2 32-291 260 1-26, 306-465 27-31, 292-305 26 160 slipknot
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3.2 30-306 277 1-26, 310-465 27-29, 307-309 26 156 slipknot
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3.2 40-277 238 1-31, 295-465 32-39, 278-294 31 171 slipknot
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2.1 55-307 253 1-32, 348-465 33-54, 308-347 32 118 slipknot
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1.1 51-252 202 1-34, 269-465 35-50, 253-268 34 197 slipknot
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2.1 60-359 300 360-465 1-34 35-59 34 105 slipknot
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2.1 58-220 163 1-35, 248-465 36-57, 221-247 35 218 slipknot
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1.1 43-217 175 1-37, 221-465 38-42, 218-220 37 245 slipknot
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1.1 46-248 203 1-39, 253-465 40-45, 249-252 39 213 slipknot
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1.1 54-252 199 1-50, 269-465 51-53, 253-268 50 197 slipknot
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1.1 48-248 201 1-45, 253-465 46-47, 249-252 45 213 slipknot
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2.1 49-248 200 1-47, 253-465 48-48, 249-252 47 213 slipknot
publication title Molecular Basis of Alternating Access Membrane Transport by the Sodium-Hydantoin Transporter Mhp1.
pubmed doi rcsb
structure length 465
molecule tags Transport protein
source organism Microbacterium liquefaciens
sequence length 465
total genus Genus: 114
molecule keywords HYDANTOIN TRANSPORT PROTEIN
ec nomenclature
pdb deposition date 2010-02-25
KnotProt deposition date 2014-07-31

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF02133 Transp_cyt_pur Permease for cytosine/purines, uracil, thiamine, allantoin
Image from the rcsb pdb (www.rcsb.org)
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similar chains in the KnotProt database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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