2YFKA

Crystal structure of a putative transcarbamoylase from enterococcus faecalis
Knot K +31
Knot core range Knot core length Knot tails range Slipknot tails range Slipknot loops range N-end length C-end length Type
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+31 193-270 78 1-192, 271-396 192 126 knot
Chain Sequence
ETFKEYIEKLDKLEFEKMYENDFFLTWEKTRDELEAVFTVADTLRYLRENNISTKIFDSGLGISLFR---TRTRFSFASACNLLGLEVQDLDEETV--------RETANMISFMADIIGIRDDMYIGKGNAYMHEVSESVQEGYKDGVLEQRPTLVNLQCDIDHPTQAMADALHLIHEFGGIENLKGKKVAMTWAYSPSYGKPLSVPQGIVGLMTRLGMDVVLAHPEGYEIMPEVEEVAKKNAAEFGGNFTKTNSMAEAFKDADVVYPKSWAPFAAMEKRTELYGNGDQAGIDQLEQELLSQNKKHKDWECTEELMKTTKDGKALYMHCLPADITGVSCEEGEVEASVFDRYRVELYKEASYKPYVIAAMIFLSKVKNPQKTLTDLADKATPREVK
Whole chain analysis
Subchain analysis 

Knotoid cutoff: 0.5


Knotoid matrix content: 1

Knot core range Knot core length Knot tails range Slipknot tails range Slipknot loops range N-end length C-end length Type
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3.1 182-260 79 1-181, 261-385 181 125 knot
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2.1 181-257 77 1-180 263-385 258-262 180 123 slipknot
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2.1 183-262 80 1-181, 270-385 182-182, 263-269 181 116 slipknot
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2.1 183-271 89 1-181, 276-385 182-182, 272-275 181 110 slipknot
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2.1 183-300 118 1-181, 312-385 182-182, 301-311 181 74 slipknot
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2.1 183-332 150 1-181, 340-385 182-182, 333-339 181 46 slipknot
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2.1 183-361 179 1-181, 365-385 182-182, 362-364 181 21 slipknot
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2.1 183-364 182 1-181, 367-385 182-182, 365-366 181 19 slipknot
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3.1 183-376 194 1-181, 385-385 182-182, 377-384 181 1 slipknot
missing residues 68-70, 94-101
publication title Crystal Structure of a Putative Transcarbamoylase from Enterococcus Faecalis with Carbamoyl Phosphate
rcsb
structure length 385
molecule tags Transferase
source organism Enterococcus faecalis
sequence length 396
total genus Genus: 146
molecule keywords ASPARTATE/ORNITHINE CARBAMOYLTRANSFERASE
ec nomenclature ec 2.1.3.-:
pdb deposition date 2011-04-06
KnotProt deposition date 2014-07-31

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00185 OTCace Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain
Image from the rcsb pdb (www.rcsb.org)
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similar chains in the KnotProt database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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