3BJXA

Structure of a group i haloacid dehalogenase from pseudomonas putida strain pp3
Knot K +31 41 +61
Knot core range Knot core length Knot tails range Slipknot tails range Slipknot loops range N-end length C-end length Type
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+61 76-291 216 1-75, 292-311 75 20 knot
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+31 141-248 108 1-42, 295-311 43-140, 249-294 42 17 slipknot
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41 125-289 165 1-4, 304-311 5-124, 290-303 4 8 slipknot
Chain Sequence
HHHHHSSGLVPRGSHMTNPAYFPQLSQLDVSGEMESTYEDIRLTLRVPWVAFGCRVLATFPGYLPLAWRRSAEALITRYAEQAADELRERSLLNIGPLPNLKERLYAAGFDDGEIEKVRRVLYAFNYGNPKYLLLITALSESMQMRPVGGAEVSSELRASIPKGHPKGMDPLLPLVDATKASTEVQGLLKRVADLHYHHGPASDFQALANWPKVLQIVTDEVLAPVARTEQYDAKSRELVTRARELVRGLPGSAGVQRSELMSMLTPNELAGLTGVLFMYQRFIADITISIIHITECLDGAEAASKSPFPI
Whole chain analysis
Subchain analysis 

Knotoid cutoff: 0.5


Knotoid matrix content: 1

Knot core range Knot core length Knot tails range Slipknot tails range Slipknot loops range N-end length C-end length Type
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2.1 89-255 167 1-73, 284-311 74-88, 256-283 73 28 slipknot
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3.1 121-254 134 1-88, 283-311 89-120, 255-282 88 29 slipknot
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3.1 121-282 162 1-88, 284-311 89-120, 283-283 88 28 slipknot
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2.1 122-279 158 1-91, 292-311 92-121, 280-291 91 20 slipknot
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2.1 122-291 170 1-92, 293-311 93-121, 292-292 92 19 slipknot
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2.3 134-280 147 1-119, 295-311 120-133, 281-294 119 17 slipknot
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2.3 134-294 161 1-122, 296-311 123-133, 295-295 122 16 slipknot
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2.3 130-295 166 1-123, 297-311 124-129, 296-296 123 15 slipknot
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2.1 136-254 119 1-120, 281-311 121-135, 255-280 120 31 slipknot
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2.1 136-280 145 1-133, 282-311 134-135, 281-281 133 30 slipknot
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2.1 136-281 146 1-133, 284-311 134-135, 282-283 133 28 slipknot
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2.3 135-283 149 1-133, 294-311 134-134, 284-293 133 18 slipknot
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2.3 136-283 148 1-134, 294-311 135-135, 284-293 134 18 slipknot
publication title The crystal structure of DehI reveals a new alpha-haloacid dehalogenase fold and active-site mechanism
pubmed doi rcsb
structure length 311
molecule tags Hydrolase
source organism Pseudomonas putida
sequence length 311
total genus Genus: 109
molecule keywords Halocarboxylic acid dehalogenase DehI
ec nomenclature ec 3.8.1.2: (S)-2-haloacid dehalogenase.
pdb deposition date 2007-12-05
KnotProt deposition date 2018-09-13

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF10778 DehI Halocarboxylic acid dehydrogenase DehI
Image from the rcsb pdb (www.rcsb.org)
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