3C2WA

Crystal structure of the photosensory core domain of p. aeruginosa bacteriophytochrome pabphp in the pfr state
Knot K 41 41
Knot core range Knot core length Knot tails range Slipknot tails range Slipknot loops range N-end length C-end length Type
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41 19-257 239 1-18, 258-490 18 233 knot
Chain Sequence
TPVTLANCEDEPIHVPGAIQPHGALVTLRADGMVLAASENIQALLGFVASPGSYLTQEQVGPEVLRMLEEGLTGNGPWSNSVETRIGEHLFDVIGHSYKEVFYLEFEIRTADTLSITSFTLNAQRIIAQVQLHNDTASLLSNVTDELRRMTGYDRVMAYRFRHDDSGEVVAESRREDLESYLGQRYPASDIPAQARRLYIQNPIRLIADVAYTPMRVFPALNPETNESFDLSYSVLRSVSPIHCEYLTNMGVRASMSISIVVGGKLWGLFSCHHMSPKLIPYPVRMSFQIFSQVCSAIVERLEQGRIAELLRVSTERRLALARRARDADDLFGALAHPDDGIAALIPCDGALVMLGGRTLSIRGDFERQAGNVLQRLQRDPERDIYHTDNW------------CCGVLAIRFHRQESGWIFWFRHEEVHRIRWGGKPEKLLTIGPSGPRLTPRGSFEAWEEVVRGHSTPWSETDLAIAEKLRLDLMELCL
Whole chain analysis
Subchain analysis 

Knotoid cutoff: 0.5


Knotoid matrix content: 1

Knot core range Knot core length Knot tails range Slipknot tails range Slipknot loops range N-end length C-end length Type
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4.1 18-297 280 1-17, 298-478 17 181 knot
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3.2m 17-253 237 1-16 261-478 254-260 16 218 slipknot
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3.2m 11-260 250 1-10 267-478 261-266 10 212 slipknot
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3.2m 17-264 248 1-16 275-478 265-274 16 204 slipknot
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3.2m 18-275 258 1-17 293-478 276-292 17 186 slipknot
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3.2m 9-293 285 1-8 299-478 294-298 8 180 slipknot
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4.1 17-295 279 1-13, 298-478 14-16, 296-297 13 181 slipknot
missing residues 392-403
publication title Crystal structure of Pseudomonas aeruginosa bacteriophytochrome: photoconversion and signal transduction.
pubmed doi rcsb
structure length 478
molecule tags Signaling protein
source organism Pseudomonas aeruginosa
sequence length 490
total genus Genus: 116
molecule keywords Bacteriophytochrome
ec nomenclature ec 2.7.13.3: Histidine kinase.
pdb deposition date 2008-01-25
KnotProt deposition date 2014-07-31

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00360 PHY Phytochrome region
Image from the rcsb pdb (www.rcsb.org)
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similar chains in the KnotProt database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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