| Knot core range | Knot core length | Knot tails range | Slipknot tails range | Slipknot loops range | N-end length | C-end length | Type | |||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| view details |
 |
+31 | 4-233 | 230 | 1-3, 234-236 | 3 | 3 | knot |
Chain Sequence |
GKRVLIVDDATNGREAVEKYKELKPDIVTMDITMPEMNGIDAIKEIMKIDPNAKIIVCSAMGQQAMVIEAIKAGAKDFIVNTAAVENPSLITQIAQTFGSQAVVVAIDAKRVDGEFMVFTYSGKKNTGILLRDWVVEVEKRGAGEILLTSIDRDGTKSGYDTEMIRFVRPLTTLPIIASGGAGKMEHFLEAFLAGADAALAASVFHFREIDVRELKEYLKKHGVNVRLEGLLEHHH
|
Knotoid cutoff: 0.5
Knotoid matrix content: 1
| Knot core range | Knot core length | Knot tails range | Slipknot tails range | Slipknot loops range | N-end length | C-end length | Type |
|---|
| sequence length |
236
|
| structure length |
236
|
| publication title |
A beta alpha-barrel built by the combination of fragments from different folds.
pubmed doi rcsb |
| molecule tags |
De novo protein
|
| molecule keywords |
beta/alpha-barrel protein based on 1THF and 1TMY
|
| source organism |
Thermotoga maritima
|
| total genus |
 Genus: 63
|
| ec nomenclature | |
| pdb deposition date | 2008-04-22 |
| KnotProt deposition date | 2014-08-23 |
| chain | Pfam Accession Code | Pfam Family Identifier | Pfam Description |
|---|---|---|---|
| X | PF00977 | His_biosynth | Histidine biosynthesis protein |
Image from the rcsb pdb (www.rcsb.org)
cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Alpha Beta | Alpha-Beta Barrel | TIM Barrel | Aldolase class I |
#chains in the KnotProt database with same CATH superfamily 1YTD A; 3CWO X; 1JR1 A; #chains in the KnotProt database with same CATH topology 1YTD A; 3CWO X; 1JR1 A; #chains in the KnotProt database with same CATH homology 1YTD A; 3CWO X; 1JR1 A;
#similar chains in the KnotProt database (?% sequence similarity) ...loading similar chains, please wait... #similar chains, but unknotted ...loading similar chains, please wait... #similar chains in the pdb database (?% sequence similarity) ...loading similar chains, please wait...
