3CWOX

A beta/alpha-barrel built by the combination of fragments from different folds
Knot K +31
Knot core range Knot core length Knot tails range Slipknot tails range Slipknot loops range N-end length C-end length Type
view details
+31 4-233 230 1-3, 234-236 3 3 knot
Chain Sequence
GKRVLIVDDATNGREAVEKYKELKPDIVTMDITMPEMNGIDAIKEIMKIDPNAKIIVCSAMGQQAMVIEAIKAGAKDFIVNTAAVENPSLITQIAQTFGSQAVVVAIDAKRVDGEFMVFTYSGKKNTGILLRDWVVEVEKRGAGEILLTSIDRDGTKSGYDTEMIRFVRPLTTLPIIASGGAGKMEHFLEAFLAGADAALAASVFHFREIDVRELKEYLKKHGVNVRLEGLLEHHH
Whole chain analysis
Subchain analysis 

Knotoid cutoff: 0.5


Knotoid matrix content: 1

Knot core range Knot core length Knot tails range Slipknot tails range Slipknot loops range N-end length C-end length Type
publication title A beta alpha-barrel built by the combination of fragments from different folds.
pubmed doi rcsb
structure length 236
molecule tags De novo protein
source organism Thermotoga maritima
sequence length 236
total genus Genus: 63
molecule keywords beta/alpha-barrel protein based on 1THF and 1TMY
ec nomenclature
pdb deposition date 2008-04-22
KnotProt deposition date 2014-08-23

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
X PF00977 His_biosynth Histidine biosynthesis protein
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.20.20.70 Alpha Beta Alpha-Beta Barrel TIM Barrel Aldolase class I 3cwoX00
3CWOX 1YTDA 1JR1A
chains in the KnotProt database with same CATH superfamily
3CWOX 1YTDA 1JR1A
chains in the KnotProt database with same CATH topology
3CWOX 1YTDA 1JR1A
chains in the KnotProt database with same CATH homology


 
#chains in the KnotProt database with same CATH superfamily
 3CWO X;  1YTD A;  1JR1 A; 
#chains in the KnotProt database with same CATH topology
 3CWO X;  1YTD A;  1JR1 A; 
#chains in the KnotProt database with same CATH homology
 3CWO X;  1YTD A;  1JR1 A; 
...loading similar chains, please wait...
similar chains in the KnotProt database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the KnotProt database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...

KnotProt | Interdisciplinary Laboratory of Biological Systems Modelling