3E0JA

X-ray structure of the complex of regulatory subunits of human dna polymerase delta
Warning
  • Chain breaks within knot 31 (displayed as a gray area on the plot and as '-' on the sequence). The broken part of the chain has been replaced by a straight segment, which may affect what knot types are detected - be careful with interpreting results.
Genus: 120
Knot K +31

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Knot core range Knot core length Knot tails range Slipknot tails range Slipknot loops range N-end length C-end length Type
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+31 46-401 356 1-45, 402-469 45 68 knot
Chain Sequence
HHHGMFSEQAAQRAHTLLSPPSANNATFARVPVATYTNSSQPFRL------------YATRLIQMRPFLENRAQQHWGSGVGVKKLCELQPEEKCCVVGTLFKAMSKYIHPDDELVL----------------------EDELQRIKLKGTIDVSKLVTGTVLAVFGSVRDDGKFLVEDYCFADLAPQKPAPPLDTDRFVLLVSGLGLGGGGGESLLGTQLLVDVVTGQLGDEGEQCSAAHVSRVILAGNLLSHLTKKTQAASVEAVKMLDEILLQLSASVPVDVMPG-------------EFDPTNYTLPQQPLHPCMFPLATAYSTLQLVTNPYQATIDGVRFLGTSGQNVSDIFRYSSMEDHLEILEWTLRVRHISPTAPDTYKTDPFIFPECPHVYFCGNTPSFGSKIIRGPEDQTVLLVTVPDFSAT------QTACLVNLRSLACQPISFSGFGAEDDDLGGL
Whole chain analysis

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Subchain analysis 

Knotoid cutoff: 0.5


Knotoid matrix content: 1


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Knot core range Knot core length Knot tails range Slipknot tails range Slipknot loops range N-end length C-end length Type
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3.1 46-391 346 1-45, 392-416 45 25 knot
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3.1 37-358 322 1-36 376-416 359-375 36 41 slipknot
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2.1 44-343 300 1-6, 357-416 7-43, 344-356 6 60 slipknot
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3.1 27-381 355 1-14, 390-416 15-26, 382-389 14 27 slipknot
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3.1 37-379 343 1-29, 389-416 30-36, 380-388 29 28 slipknot
How to cite
KnotProt | Interdisciplinary Laboratory of Biological Systems Modelling