3E2DA

The 1.4 a crystal structure of the large and cold-active vibrio sp. alkaline phosphatase
Slipknot S +31
Knot core range Knot core length Knot tails range Slipknot tails range Slipknot loops range N-end length C-end length Type
view details
+31 10-315 306 1-9 470-502 316-469 9 33 slipknot
Chain Sequence
AEIKNVILMIGDGMGPQQVGLLETYANQAPNSIYKGNKTAIYQLAQEGVIGSSLTHPEDAIVVDSACSATMLATGIYSSSEVIGIDSQGNHVETVLEKAKKAGKATGLVSDTRLTHATPASFAAHQPHRSLENQIASDMLATGADVMLSGGLRHWIPKSTNDKGETYKQLEKLTQGDVYLKSKRKDDRNLLTEAEKDGYQLAFNRNMLDDAKGDKLLGLFAYSGMDDGIAYSNKKKSGERTQPSLKEMTQKALNILSKDEDGFFLMVEGGQIDWAGHSNDAGTMLHELLKFDEAIQTVYEWAKDREDTIVIVTADHETGSFGFSYSSNDLPKPQKRSGEAFADRDYAPNFNFGAFDILDGLYNQKQSYYGMISEFQKLDKSLQTPEKLAEIVNKNSEFPITAEQAKNVLASKPNPYRLAQHKYLSAEEVPAINDFDAFFPYNDRGNLLAREQATGQNIVWGTGTHTHTPVNVFAWGPAEKILPVSKIMHHSELGEYIKQQVN
Note, that the numbers in the matrix denote the consecutive residues in the loop, not the index of amino acids in the chain!
Knot K 4x -31
Knot core range Knot core length Knot tails range Slipknot tails range Slipknot loops range N-end length C-end length Type
- 31 13-113 101 1-12, 114-144 12 31 knot
Fingerprint Knot forming loop Loop type
K -31
Chain closureAla1 <-> Asn502
... His465 <->
Bridging ionZn601
<-> His277 ... Asp315 <->
Bridging ionZn602
<-> Ser65 ... Ala1
probabilistic
K -31
Chain closureAla1 <-> Asn502
... His465 <->
Bridging ionZn601
<-> Asp273 ... Asp315 <->
Bridging ionZn602
<-> Ser65 ... Ala1
probabilistic
K -31
Chain closureAla1 <-> Asn502
... His465 <->
Bridging ionZn601
<-> His277 ... His316 <->
Bridging ionZn602
<-> Ser65 ... Ala1
probabilistic
K -31
Chain closureAla1 <-> Asn502
... His465 <->
Bridging ionZn601
<-> Asp273 ... His316 <->
Bridging ionZn602
<-> Ser65 ... Ala1
probabilistic
Chain Sequence
AEIKNVILMIGDGMGPQQVGLLETYANQAPNSIYKGNKTAIYQLAQEGVIGSSLTHPEDAIVVDSACSATMLATGIYSSSEVIGIDSQGNHVETVLEKAKKAGKATGLVSDTRLTHATPASFAAHQPHRSLENQIASDMLATGADVMLSGGLRHWIPKSTNDKGETYKQLEKLTQGDVYLKSKRKDDRNLLTEAEKDGYQLAFNRNMLDDAKGDKLLGLFAYSGMDDGIAYSNKKKSGERTQPSLKEMTQKALNILSKDEDGFFLMVEGGQIDWAGHSNDAGTMLHELLKFDEAIQTVYEWAKDREDTIVIVTADHETGSFGFSYSSNDLPKPQKRSGEAFADRDYAPNFNFGAFDILDGLYNQKQSYYGMISEFQKLDKSLQTPEKLAEIVNKNSEFPITAEQAKNVLASKPNPYRLAQHKYLSAEEVPAINDFDAFFPYNDRGNLLAREQATGQNIVWGTGTHTHTPVNVFAWGPAEKILPVSKIMHHSELGEYIKQQVN
Whole chain analysis
Subchain analysis 

Knotoid cutoff: 0.5


Knotoid matrix content: 1

Knot core range Knot core length Knot tails range Slipknot tails range Slipknot loops range N-end length C-end length Type
view details
3.1 9-317 309 1-8 467-502 318-466 8 36 slipknot
view details
2.1 11-332 322 1-8, 339-502 9-10, 333-338 8 164 slipknot
view details
2.1 11-338 328 1-8, 348-502 9-10, 339-347 8 155 slipknot
publication title The 1.4 A crystal structure of the large and cold-active Vibrio sp. alkaline phosphatase.
pubmed doi rcsb
structure length 502
molecule tags Hydrolase
source organism Vibrio sp. g15-21
sequence length 502
total genus Genus: 199
molecule keywords Alkaline phosphatase
ec nomenclature ec 3.1.3.1: Alkaline phosphatase.
pdb deposition date 2008-08-05
KnotProt deposition date 2018-10-19

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00245 Alk_phosphatase Alkaline phosphatase
Image from the rcsb pdb (www.rcsb.org)
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similar chains in the KnotProt database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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