3F4IA

Crystal structure of leut bound to l-selenomethionine and sodium
Warning
  • Chain breaks within knot 31 (displayed as a gray area on the plot and as '-' on the sequence). The broken part of the chain has been replaced by a straight segment, which may affect what knot types are detected - be careful with interpreting results.
  • Chain breaks within knot 41 (displayed as a gray area on the plot and as '-' on the sequence). The broken part of the chain has been replaced by a straight segment, which may affect what knot types are detected - be careful with interpreting results.
Slipknot S +31 41 +31
Knot core range Knot core length Knot tails range Slipknot tails range Slipknot loops range N-end length C-end length Type
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+31 39-264 226 265-511 1-23 24-38 23 246 slipknot
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41 13-293 281 1-12 346-511 294-345 12 166 slipknot
Chain Sequence
REHWATRLGLILAMAGNAVGLGNFLRFPVQAAENGGGAFMIPYIIAFLLVGIPLMWIEWAMGRYGGAQGHGTTPAIFYLLWRNRFAKILGVFGLWIPLVVAIYYVYIESWTLGFAIKFLVGLVPEPPP--TDPDSILRPFKEFLYSYIGVPKGDEPILKPSLFAYIVFLITMFINVSILIRGISKGIERFAKIAMPTLFILAVFLVIRVFLLETPNGTAADGLNFLWTPDFEKLKDPGVWIAAVGQIFFTLSLGFGAIITYASYVRKDQDIVLSGLTAATLNEKAEVILGGSISIPAAVAFFGVANAVAIAKAGAFNLGFITLPAIFSQTAGGTFLGFLWFFLLFFAGLTSSIAIMQPMIAFLEDELKLSRKHAVLWTAAIVFFSAHLVMFLNKSLDEMDFWAGTIGVVFFGLTELIIFFWIFGADKAWEEINRGGIIKVPRIYYYVMRYITPAFLAVLLVVWAREYIPKIMEETHWTVWITRFYIIGLFLFLTFLVFLAERRRNHESAGTM
Whole chain analysis
Subchain analysis 

Knotoid cutoff: 0.5


Knotoid matrix content: 1

Knot core range Knot core length Knot tails range Slipknot tails range Slipknot loops range N-end length C-end length Type
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3.2 10-287 278 1-9 300-509 288-299 9 210 slipknot
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3.2 5-328 324 1-4 334-509 329-333 4 176 slipknot
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4.1 7-330 324 1-6 336-509 331-335 6 174 slipknot
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3.2 15-335 321 1-14 350-509 336-349 14 160 slipknot
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4.1 11-302 292 1-4, 315-509 5-10, 303-314 4 195 slipknot
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4.1 17-313 297 1-4, 318-509 5-16, 314-317 4 192 slipknot
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4.1 12-303 292 1-10, 313-509 11-11, 304-312 10 197 slipknot
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2.1 35-257 223 1-17, 272-509 18-34, 258-271 17 238 slipknot
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2.1 43-354 312 1-17, 397-509 18-42, 355-396 17 113 slipknot
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2.1 35-415 381 1-17, 465-509 18-34, 416-464 17 45 slipknot
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2.1 41-413 373 414-509 1-18 19-40 18 95 slipknot
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2.1 25-279 255 1-20, 289-509 21-24, 280-288 20 221 slipknot
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2.1 30-272 243 1-22, 282-509 23-29, 273-281 22 228 slipknot
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1.1 41-243 203 1-23, 258-509 24-40, 244-257 23 252 slipknot
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1.1 41-274 234 1-26, 292-509 27-40, 275-291 26 218 slipknot
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2.1 36-269 234 1-31, 273-509 32-35, 270-272 31 237 slipknot
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2.1 42-261 220 1-35, 273-509 36-41, 262-272 35 237 slipknot
missing residues 129-130
publication title A competitive inhibitor traps LeuT in an open-to-out conformation.
pubmed doi rcsb
structure length 509
molecule tags Transport protein
source organism Aquifex aeolicus
sequence length 511
total genus Genus: 212
molecule keywords Transporter
ec nomenclature
pdb deposition date 2008-10-31
KnotProt deposition date 2014-07-31

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00209 SNF Sodium:neurotransmitter symporter family
Image from the rcsb pdb (www.rcsb.org)
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similar chains in the KnotProt database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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KnotProt | Interdisciplinary Laboratory of Biological Systems Modelling