3F4JA

Crystal structure of leut bound to glycine and sodium
Warning
  • Chain breaks within knot 31 (displayed as a gray area on the plot and as '-' on the sequence). The broken part of the chain has been replaced by a straight segment, which may affect what knot types are detected - be careful with interpreting results.
  • Chain breaks within knot 41 (displayed as a gray area on the plot and as '-' on the sequence). The broken part of the chain has been replaced by a straight segment, which may affect what knot types are detected - be careful with interpreting results.
Genus: 215
Slipknot S +31 41 +31

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Knot core range Knot core length Knot tails range Slipknot tails range Slipknot loops range N-end length C-end length Type
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+31 39-263 225 264-511 1-23 24-38 23 247 slipknot
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41 13-293 281 1-12 349-511 294-348 12 163 slipknot
Chain Sequence
REHWATRLGLILAMAGNAVGLGNFLRFPVQAAENGGGAFMIPYIIAFLLVGIPLMWIEWAMGRYGGAQGHGTTPAIFYLLWRNRFAKILGVFGLWIPLVVAIYYVYIESWTLGFAIKFLVGLVPEPPP--TDPDSILRPFKEFLYSYIGVPKGDEPILKPSLFAYIVFLITMFINVSILIRGISKGIERFAKIAMPTLFILAVFLVIRVFLLETPNGTAADGLNFLWTPDFEKLKDPGVWIAAVGQIFFTLSLGFGAIITYASYVRKDQDIVLSGLTAATLNEKAEVILGGSISIPAAVAFFGVANAVAIAKAGAFNLGFITLPAIFSQTAGGTFLGFLWFFLLFFAGLTSSIAIMQPMIAFLEDELKLSRKHAVLWTAAIVFFSAHLVMFLNKSLDEMDFWAGTIGVVFFGLTELIIFFWIFGADKAWEEINRGGIIKVPRIYYYVMRYITPAFLAVLLVVWAREYIPKIMEETHWTVWITRFYIIGLFLFLTFLVFLAERRRNHESAGT
Whole chain analysis

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Subchain analysis 

Knotoid cutoff: 0.5


Knotoid matrix content: 1


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Knot core range Knot core length Knot tails range Slipknot tails range Slipknot loops range N-end length C-end length Type
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3.2 12-287 276 1-11 300-509 288-299 11 210 slipknot
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4.1 10-306 297 1-9 315-509 307-314 9 195 slipknot
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3.2 7-314 308 1-6 318-509 315-317 6 192 slipknot
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3.2 7-317 311 1-6 320-509 318-319 6 190 slipknot
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3.2 16-331 316 1-15 346-509 332-345 15 164 slipknot
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4.1 10-299 290 1-2, 305-509 3-9, 300-304 2 205 slipknot
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2.1 31-253 223 1-17, 268-509 18-30, 254-267 17 242 slipknot
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2.1 29-411 383 1-17, 453-509 18-28, 412-452 17 57 slipknot
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2.1 27-483 457 1-17, 497-509 18-26, 484-496 17 13 slipknot
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2.1 42-407 366 408-509 1-19 20-41 19 101 slipknot
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2.1 42-354 313 1-20, 405-509 21-41, 355-404 20 105 slipknot
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1.1 40-243 204 1-25, 254-509 26-39, 244-253 25 256 slipknot
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1.1 40-253 214 1-30, 257-509 31-39, 254-256 30 253 slipknot
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1.1 32-278 247 1-26, 289-509 27-31, 279-288 26 221 slipknot
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3.1 42-263 222 1-30, 276-509 31-41, 264-275 30 234 slipknot
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1.1 42-275 234 1-33, 292-509 34-41, 276-291 33 218 slipknot
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1.1 43-275 233 1-41, 289-509 42-42, 276-288 41 221 slipknot
sequence length 511
structure length 509
publication title A competitive inhibitor traps LeuT in an open-to-out conformation.
pubmed doi rcsb
molecule tags Transport protein
molecule keywords Transporter
source organism Aquifex aeolicus
missing residues 129-130
total genus Genus: 215
ec nomenclature
pdb deposition date 2008-10-31
KnotProt deposition date 2014-07-31

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00209 SNF Sodium:neurotransmitter symporter family
Image from the rcsb pdb (www.rcsb.org)
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similar chains in the KnotProt database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

  
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How to cite
KnotProt | Interdisciplinary Laboratory of Biological Systems Modelling