3GI8C

Crystal structure of apct k158a transporter bound to 7f11 monoclonal fab fragment
Slipknot S +31 41 +31
Knot core range Knot core length Knot tails range Slipknot tails range Slipknot loops range N-end length C-end length Type
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+31 40-205 166 206-435 1-23 24-39 23 229 slipknot
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41 17-243 227 1-16 289-435 244-288 16 147 slipknot
Chain Sequence
MELKNKKLSLWEAVSMAVGVMIGASIFSIFGVGAKIAGRNLPETFILSGIYALLVAYSYTKLGAKIVSNAGPIAFIHKAIGDNIITGALSILLWMSYVISIALFAKGFAGYFLPLINAPINTFNIAITEIGIVAFFTALNFFGSKAVGRAEFFIVLVALLILGLFIFAGLITIHPSYVIPDLAPSAVSGMIFASAIFFLSYMGFGVITNASEHIENPKKNVPRAIFISILIVMFVYVGVAISAIGNLPIDELIKASENALAVAAKPFLGNLGFLLISIGALFSISSAMNATIYGGANVAYSLAKDGELPEFFERKVWFKSTEGLYITSALGVLFALLFNMEGVASITSAVFMVIYLFVILSHYILIDEVGGRKEIVIFSFIVVLGVFLLLLYYQWITNRFVFYGIIATFIGVLIFEIIYRKVTKRTFSNNMYVKS
Whole chain analysis
Subchain analysis 

Knotoid cutoff: 0.5


Knotoid matrix content: 1

Knot core range Knot core length Knot tails range Slipknot tails range Slipknot loops range N-end length C-end length Type
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3.2 12-236 225 1-11 247-435 237-246 11 189 slipknot
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4.1 8-246 239 1-7 253-435 247-252 7 183 slipknot
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4.1 11-264 254 1-10 275-435 265-274 10 161 slipknot
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4.1 18-265 248 1-17 284-435 266-283 17 152 slipknot
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3.2 18-283 266 1-17 285-435 284-284 17 151 slipknot
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1.1 24-221 198 1-17, 242-435 18-23, 222-241 17 194 slipknot
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2.1 46-290 245 1-17, 340-435 18-45, 291-339 17 96 slipknot
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2.1 32-206 175 1-19, 223-435 20-31, 207-222 19 213 slipknot
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2.1 46-361 316 362-435 1-19 20-45 19 73 slipknot
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2.1 35-203 169 1-20, 217-435 21-34, 204-216 20 219 slipknot
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1.1 35-216 182 1-31, 223-435 32-34, 217-222 31 213 slipknot
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2.1 36-206 171 1-34, 223-435 35-35, 207-222 34 213 slipknot
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2.1 31-222 192 1-23, 226-435 24-30, 223-225 23 210 slipknot
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1.1 47-227 181 1-32, 244-435 33-46, 228-243 32 192 slipknot
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2.1 42-197 156 1-35, 209-435 36-41, 198-208 35 227 slipknot
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2.1 46-208 163 1-35, 221-435 36-45, 209-220 35 215 slipknot
publication title Structure and mechanism of a na+-independent amino Acid transporter.
pubmed doi rcsb
structure length 435
molecule tags Transport protein
source organism Methanocaldococcus jannaschii
sequence length 435
total genus Genus: 161
molecule keywords Uncharacterized protein MJ0609
ec nomenclature
pdb deposition date 2009-03-05
KnotProt deposition date 2014-07-31

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
C PF13520 AA_permease_2 Amino acid permease
Image from the rcsb pdb (www.rcsb.org)
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similar chains in the KnotProt database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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