3GIAA

Crystal structure of apct transporter
Slipknot S +31 41 +31
Knot core range Knot core length Knot tails range Slipknot tails range Slipknot loops range N-end length C-end length Type
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+31 39-206 168 207-433 1-20 21-38 20 226 slipknot
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41 15-240 226 1-14 283-433 241-282 14 151 slipknot
Chain Sequence
LKNKKLSLWEAVSMAVGVMIGASIFSIFGVGAKIAGRNLPETFILSGIYALLVAYSYTKLGAKIVSNAGPIAFIHKAIGDNIITGALSILLWMSYVISIALFAKGFAGYFLPLINAPINTFNIAITEIGIVAFFTALNFFGSKAVGRAEFFIVLVKLLILGLFIFAGLITIHPSYVIPDLAPSAVSGMIFASAIFFLSYMGFGVITNASEHIENPKKNVPRAIFISILIVMFVYVGVAISAIGNLPIDELIKASENALAVAAKPFLGNLGFLLISIGALFSISSAMNATIYGGANVAYSLAKDGELPEFFERKVWFKSTEGLYITSALGVLFALLFNMEGVASITSAVFMVIYLFVILSHYILIDEVGGRKEIVIFSFIVVLGVFLLLLYYQWITNRFVFYGIIATFIGVLIFEIIYRKVTKRTFSNNMYVKS
Whole chain analysis
Subchain analysis 

Knotoid cutoff: 0.5


Knotoid matrix content: 1

Knot core range Knot core length Knot tails range Slipknot tails range Slipknot loops range N-end length C-end length Type
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3.2 12-233 222 1-11 245-433 234-244 11 189 slipknot
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4.1 8-244 237 1-7 256-433 245-255 7 178 slipknot
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4.1 22-257 236 1-21 279-433 258-278 21 155 slipknot
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3.2 13-280 268 1-12 288-433 281-287 12 146 slipknot
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3.2 11-254 244 1-3, 258-433 4-10, 255-257 3 176 slipknot
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2.3 22-237 216 1-11, 247-433 12-21, 238-246 11 187 slipknot
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2.1 29-206 178 1-15, 223-433 16-28, 207-222 15 211 slipknot
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2.1 44-287 244 1-15, 342-433 16-43, 288-341 15 92 slipknot
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2.1 44-353 310 354-433 1-15 16-43 15 79 slipknot
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1.1 26-225 200 1-16, 237-433 17-25, 226-236 16 197 slipknot
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1.1 26-236 211 1-17, 242-433 18-25, 237-241 17 192 slipknot
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2.1 36-208 173 1-29, 221-433 30-35, 209-220 29 213 slipknot
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1.1 45-220 176 1-31, 244-433 32-44, 221-243 31 190 slipknot
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2.1 44-206 163 1-36, 219-433 37-43, 207-218 36 215 slipknot
publication title Structure and mechanism of a na+-independent amino Acid transporter.
pubmed doi rcsb
structure length 433
molecule tags Transport protein
source organism Methanocaldococcus jannaschii
sequence length 433
total genus Genus: 193
molecule keywords Uncharacterized protein MJ0609
ec nomenclature
pdb deposition date 2009-03-05
KnotProt deposition date 2014-07-31

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF13520 AA_permease_2 Amino acid permease
Image from the rcsb pdb (www.rcsb.org)
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similar chains in the KnotProt database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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