3GJCA

Crystal structure of the e290s mutant of leut with bound og
Slipknot S +31 41 +31
Knot core range Knot core length Knot tails range Slipknot tails range Slipknot loops range N-end length C-end length Type
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+31 41-262 222 263-504 1-21 22-40 21 241 slipknot
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41 15-294 280 1-14 351-504 295-350 14 154 slipknot
Chain Sequence
VKREHWATRLGLILAMAGNAVGLGNFLRFPVQAAENGGGAFMIPYIIAFLLVGIPLMWIEWAMGRYGGAQGHGTTPAIFYLLWRNRFAKILGVFGLWIPLVVAIYYVYIESWTLGFAIKFLVGLVPEPPPNATDPDSILRPFKEFLYSYIGVPKGDEPILKPSLFAYIVFLITMFINVSILIRGISKGIERFAKIAMPTLFILAVFLVIRVFLLETPNGTAADGLNFLWTPDFEKLKDPGVWIAAVGQIFFTLSLGFGAIITYASYVRKDQDIVLSGLTAATLNEKASVILGGSISIPAAVAFFGVANAVAIAKAGAFNLGFITLPAIFSQTAGGTFLGFLWFFLLFFAGLTSSIAIMQPMIAFLEDELKLSRKHAVLWTAAIVFFSAHLVMFLNKSLDEMDFWAGTIGVVFFGLTELIIFFWIFGADKAWEEINRGGIIKVPRIYYYVMRYITPAFLAVLLVVWARE------EETHWTVWITRFYIIGLFLFLTFLVFLAER
Whole chain analysis
Subchain analysis 

Knotoid cutoff: 0.5


Knotoid matrix content: 1

Knot core range Knot core length Knot tails range Slipknot tails range Slipknot loops range N-end length C-end length Type
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3.2 14-291 278 1-13 304-498 292-303 13 195 slipknot
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4.1 11-304 294 1-10 313-498 305-312 10 186 slipknot
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4.1 6-314 309 1-5 321-498 315-320 5 178 slipknot
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3.2 17-337 321 1-3, 352-498 4-16, 338-351 3 147 slipknot
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4.1 11-329 319 1-4, 335-498 5-10, 330-334 4 164 slipknot
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1.1 25-276 252 1-19, 286-498 20-24, 277-285 19 213 slipknot
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2.1 36-416 381 1-20, 458-498 21-35, 417-457 20 41 slipknot
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2.1 34-259 226 1-21, 275-498 22-33, 260-274 21 224 slipknot
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2.1 44-358 315 1-21, 402-498 22-43, 359-401 21 97 slipknot
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2.1 45-413 369 414-498 1-22 23-44 22 84 slipknot
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1.1 42-250 209 1-26, 259-498 27-41, 251-258 26 240 slipknot
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1.1 42-258 217 1-26, 262-498 27-41, 259-261 26 237 slipknot
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1.1 42-261 220 1-33, 263-498 34-41, 262-262 33 236 slipknot
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1.1 43-278 236 1-28, 295-498 29-42, 279-294 28 204 slipknot
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1.1 42-294 253 1-28, 297-498 29-41, 295-296 28 202 slipknot
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1.1 43-252 210 1-41, 260-498 42-42, 253-259 41 239 slipknot
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3.1 40-270 231 1-34, 278-498 35-39, 271-277 34 221 slipknot
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2.1 45-264 220 1-37, 277-498 38-44, 265-276 37 222 slipknot
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2.1 45-276 232 1-37, 279-498 38-44, 277-278 37 220 slipknot
missing residues 469-474
publication title Binding of an octylglucoside detergent molecule in the second substrate (S2) site of LeuT establishes an inhibitor-bound conformation
pubmed doi rcsb
structure length 498
molecule tags Transport protein
source organism Aquifex aeolicus
sequence length 504
total genus Genus: 192
molecule keywords Transporter
ec nomenclature
pdb deposition date 2009-03-08
KnotProt deposition date 2014-07-31

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00209 SNF Sodium:neurotransmitter symporter family
Image from the rcsb pdb (www.rcsb.org)
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similar chains in the KnotProt database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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