3GJDA

Crystal structure of leut with bound og
Warning
  • Chain breaks within knot 31 (displayed as a gray area on the plot and as '-' on the sequence). The broken part of the chain has been replaced by a straight segment, which may affect what knot types are detected - be careful with interpreting results.
  • Chain breaks within knot 41 (displayed as a gray area on the plot and as '-' on the sequence). The broken part of the chain has been replaced by a straight segment, which may affect what knot types are detected - be careful with interpreting results.
Genus: 213
Slipknot S +31 41 +31

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Knot core range Knot core length Knot tails range Slipknot tails range Slipknot loops range N-end length C-end length Type
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+31 39-264 226 265-511 1-20 21-38 20 246 slipknot
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41 15-293 279 1-14 346-511 294-345 14 166 slipknot
Chain Sequence
REHWATRLGLILAMAGNAVGLGNFLRFPVQAAENGGGAFMIPYIIAFLLVGIPLMWIEWAMGRYGGAQGHGTTPAIFYLLWRNRFAKILGVFGLWIPLVVAIYYVYIESWTLGFAIKFLVGLVPEPPP--TDPDSILRPFKEFLYSYIGVPKGDEPILKPSLFAYIVFLITMFINVSILIRGISKGIERFAKIAMPTLFILAVFLVIRVFLLETPNGTAADGLNFLWTPDFEKLKDPGVWIAAVGQIFFTLSLGFGAIITYASYVRKDQDIVLSGLTAATLNEKAEVILGGSISIPAAVAFFGVANAVAIAKAGAFNLGFITLPAIFSQTAGGTFLGFLWFFLLFFAGLTSSIAIMQPMIAFLEDELKLSRKHAVLWTAAIVFFSAHLVMFLNKSLDEMDFWAGTIGVVFFGLTELIIFFWIFGADKAWEEINRGGIIKVPRIYYYVMRYITPAFLAVLLVVWAREYIPKIMEETHWTVWITRFYIIGLFLFLTFLVFLAERRRNHESAGT
Whole chain analysis

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Subchain analysis 

Knotoid cutoff: 0.5


Knotoid matrix content: 1


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Knot core range Knot core length Knot tails range Slipknot tails range Slipknot loops range N-end length C-end length Type
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3.2 11-287 277 1-10 301-509 288-300 10 209 slipknot
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3.2 9-301 293 1-8 314-509 302-313 8 196 slipknot
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3.2 7-313 307 1-6 319-509 314-318 6 191 slipknot
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3.2 14-332 319 1-13 346-509 333-345 13 164 slipknot
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3.2 11-304 294 1-8, 312-509 9-10, 305-311 8 198 slipknot
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2.1 42-425 384 426-509 1-16 17-41 16 83 slipknot
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2.1 34-259 226 1-17, 271-509 18-33, 260-270 17 239 slipknot
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1.1 33-242 210 1-21, 253-509 22-32, 243-252 21 257 slipknot
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2.1 32-276 245 1-21, 287-509 22-31, 277-286 21 223 slipknot
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2.1 41-353 313 1-21, 397-509 22-40, 354-396 21 113 slipknot
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1.1 41-275 235 1-29, 294-509 30-40, 276-293 29 216 slipknot
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3.1 37-264 228 1-31, 276-509 32-36, 265-275 31 234 slipknot
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2.1 40-243 204 1-33, 251-509 34-39, 244-250 33 259 slipknot
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2.1 41-262 222 1-34, 276-509 35-40, 263-275 34 234 slipknot
sequence length 511
structure length 509
publication title Binding of an octylglucoside detergent molecule in the second substrate (S2) site of LeuT establishes an inhibitor-bound conformation
pubmed doi rcsb
molecule tags Transport protein
molecule keywords Transporter
source organism Aquifex aeolicus
missing residues 129-130
total genus Genus: 213
ec nomenclature
pdb deposition date 2009-03-08
KnotProt deposition date 2014-07-31

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00209 SNF Sodium:neurotransmitter symporter family
Image from the rcsb pdb (www.rcsb.org)
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similar chains in the KnotProt database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

  
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How to cite
KnotProt | Interdisciplinary Laboratory of Biological Systems Modelling