| Knot core range | Knot core length | Knot tails range | Slipknot tails range | Slipknot loops range | N-end length | C-end length | Type | |||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| view details |
 |
+31 | 128-319 | 192 | 320-493 | 1-91 | 92-127 | 91 | 173 | slipknot | ||
| view details |
 |
41 | 87-354 | 268 | 1-86 | 410-493 | 355-409 | 86 | 84 | slipknot |
Chain Sequence |
PKVFFPPLIIVGILCWLTVRDLDAANVVINAVFSYVTNVWGWAFEWYMVVMLFGWFWLVFGPYAKKRLGNEPPEFSTASWIFMMFASCTSAAVLFWGSIEIYYYISTPPFGLEPNSTGAKELGLAYSLFHWGPLPWATYSFLSVAFAYFFFVRKMEVIRPSSTLVPLVGEKHAKGLFGTIVDNFYLVALIFAMGTSLGLATPLVTECMQWLFGIPHTLQLDAIIITCWIILNAICVACGLQKGVRIASDVRSYLSFLMLGWVFIVSGASFIMNYFTDSVGMLLMYLPRMLFYTDPIAKGGFPQGWTVFYWAWWVIYAIQMSIFLARISRGRTVRELCFGMVLGLTASTWILWTVLGSNTLLLIDKNIINIPNLIEQYGVARAIIETWAALPLSTATMWGFFILCFIATVTLVNACSYTLAMSTCREVRDGEEPPLLVRIGWSILVGIIGIVLLALGGLKPIQTAIIAGGCPLFFVNIMVTLSFIKDAKQNWKD
|
Knotoid cutoff: 0.5
Knotoid matrix content: 1
| Knot core range | Knot core length | Knot tails range | Slipknot tails range | Slipknot loops range | N-end length | C-end length | Type | |||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| view details |
 |
3.2 | 51-346 | 296 | 1-50 | 361-493 | 347-360 | 50 | 133 | slipknot | ||
| view details |
 |
4.1 | 52-363 | 312 | 1-51 | 403-493 | 364-402 | 51 | 91 | slipknot | ||
| view details |
|
4.1 | 41-402 | 362 | 1-40 | 414-493 | 403-413 | 40 | 80 | slipknot | ||
| view details |
|
3.2 | 39-413 | 375 | 1-1, 415-493 | 2-38, 414-414 | 1 | 79 | slipknot | |||
| view details |
|
3.2 | 69-357 | 289 | 1-28, 403-493 | 29-68, 358-402 | 28 | 91 | slipknot | |||
| view details |
|
4.1 | 69-402 | 334 | 1-40, 405-493 | 41-68, 403-404 | 40 | 89 | slipknot | |||
| view details |
|
3.2 | 71-357 | 287 | 1-68, 403-493 | 69-70, 358-402 | 68 | 91 | slipknot | |||
| view details |
|
4.1 | 71-402 | 332 | 1-68, 405-493 | 69-70, 403-404 | 68 | 89 | slipknot | |||
| view details |
|
4.1 | 73-357 | 285 | 1-70, 403-493 | 71-72, 358-402 | 70 | 91 | slipknot | |||
| view details |
|
4.1 | 73-402 | 330 | 1-70, 405-493 | 71-72, 403-404 | 70 | 89 | slipknot | |||
| view details |
|
3.2 | 75-357 | 283 | 1-72, 403-493 | 73-74, 358-402 | 72 | 91 | slipknot | |||
| view details |
|
4.1 | 78-357 | 280 | 1-74, 403-493 | 75-77, 358-402 | 74 | 91 | slipknot | |||
| view details |
|
4.1 | 83-357 | 275 | 1-77, 403-493 | 78-82, 358-402 | 77 | 91 | slipknot | |||
| view details |
|
3.2 | 92-379 | 288 | 1-74, 405-493 | 75-91, 380-404 | 74 | 89 | slipknot | |||
| view details |
|
3.2 | 93-383 | 291 | 1-91, 399-493 | 92-92, 384-398 | 91 | 95 | slipknot | |||
| view details |
 |
2.1 | 110-411 | 302 | 1-87, 447-493 | 88-109, 412-446 | 87 | 47 | slipknot | |||
| view details |
|
2.1 | 102-478 | 377 | 479-493 | 1-87 | 88-101 | 87 | 14 | slipknot | ||
| view details |
|
2.1 | 122-314 | 193 | 1-104, 327-493 | 105-121, 315-326 | 104 | 167 | slipknot | |||
| view details |
|
2.1 | 122-340 | 219 | 1-104, 356-493 | 105-121, 341-355 | 104 | 138 | slipknot | |||
| view details |
 |
3.1 | 123-419 | 297 | 1-109, 433-493 | 110-122, 420-432 | 109 | 61 | slipknot | |||
| view details |
|
3.1 | 123-432 | 310 | 1-109, 442-493 | 110-122, 433-441 | 109 | 52 | slipknot | |||
| view details |
|
3.1 | 122-466 | 345 | 1-107, 480-493 | 108-121, 467-479 | 107 | 14 | slipknot | |||
| view details |
|
3.1 | 124-481 | 358 | 482-493 | 1-111 | 112-123 | 111 | 11 | slipknot | ||
| view details |
|
2.1 | 132-410 | 279 | 1-116, 462-493 | 117-131, 411-461 | 116 | 32 | slipknot | |||
| view details |
|
2.1 | 132-461 | 330 | 1-116, 478-493 | 117-131, 462-477 | 116 | 16 | slipknot | |||
| view details |
|
2.1 | 133-436 | 304 | 1-131, 478-493 | 132-132, 437-477 | 131 | 16 | slipknot | |||
| view details |
|
3.1 | 134-436 | 303 | 1-132, 475-493 | 133-133, 437-474 | 132 | 19 | slipknot | |||
| view details |
|
2.1 | 133-477 | 345 | 478-493 | 1-120 | 121-132 | 120 | 15 | slipknot | ||
| view details |
|
2.1 | 134-325 | 192 | 1-121, 340-493 | 122-133, 326-339 | 121 | 154 | slipknot | |||
| view details |
 |
1.1 | 134-341 | 208 | 1-121, 357-493 | 122-133, 342-356 | 121 | 137 | slipknot |
| sequence length |
493
|
| structure length |
493
|
| publication title |
Crystal structure of the carnitine transporter and insights into the antiport mechanism
pubmed doi rcsb |
| molecule tags |
Transport protein
|
| molecule keywords |
L-carnitine/gamma-butyrobetaine antiporter
|
| source organism |
Escherichia coli
|
| total genus |
 Genus: 164
|
| ec nomenclature | |
| pdb deposition date | 2009-05-13 |
| KnotProt deposition date | 2014-07-31 |
| chain | Pfam Accession Code | Pfam Family Identifier | Pfam Description |
|---|---|---|---|
| A | PF02028 | BCCT | BCCT family transporter |
Image from the rcsb pdb (www.rcsb.org)
#similar chains in the KnotProt database (?% sequence similarity) ...loading similar chains, please wait... #similar chains, but unknotted ...loading similar chains, please wait... #similar chains in the pdb database (?% sequence similarity) ...loading similar chains, please wait...
